Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq104 262 4e-65 seq473 129 7e-25 seq941 111 2e-19 seq61 104 3e-17 >seq104 Length=21139217 Score = 262 bits (290), Expect = 4e-65 Identities = 558/825 (68%), Gaps = 10/825 (1%) Strand=Plus/Minus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 ||||| || || || ||||| ||||| || || |||||||| |||| |||||| | | Sbjct 9083978 TGGTACTCTCCCACCTTTTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCC 9083919 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT-AA 92922 | | ||| || ||||||| ||| || ||| || || |||||| |||| || Sbjct 9083918 ATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAACTCC-ACAAGCAA 9083860 Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982 | ||| || || || ||||||||||| ||||||| ||||||||||| || | | | Sbjct 9083859 ACGATCCGCCACGAACTCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATT 9083800 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 ||||| || || ||||| | ||| || | ||| || | || || || | ||| || Sbjct 9083799 AACAGGCAGGGCATCGGTGAGGAATTCCTGCTCAATCGCCACTGCGTCGCGGATGATCTC 9083740 Query 93043 TATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAAA 93099 || | | || |||| || || || | | | | |||| | ||||| |||| Sbjct 9083739 GATGATGCGCTCGCGCTTGG--GTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCAAA 9083683 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 |||| || || || ||||| || || || | ||| ||| ||| || | || || | Sbjct 9083682 GTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCAT 9083623 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 || || || ||||| ||||| || || || || || || || ||||| || || || Sbjct 9083622 AAGACCGCGCTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCGCTGAAAAAGATGCCCTC 9083563 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 |||||| ||||| || | || || || ||||||| || || ||| | ||||| Sbjct 9083562 CACGGCGGCAAAGGCGATGATGCGCTCCCCAAAATTGGCCGACTTAGAGGAAATCCAGGA 9083503 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 | ||||| || || || ||| | | || | ||||| |||||||| || ||||| Sbjct 9083502 AAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCAATAGCGTTGAACAGGTA 9083443 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 ||||||| || || ||| || ||||| || ||||| | || | ||||| || || || Sbjct 9083442 CTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAGTG 9083383 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| ||||| || || |||||||| || | || || ||||||||||| || Sbjct 9083382 CACGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAGCGTGCCTCTGTGATCTGCACCTC 9083323 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||| || | || || ||||| || || || || |||||||| || || || || || Sbjct 9083322 CTGACTGAAGCGTTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCGGCGAAGAAGGC 9083263 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 || | ||| || ||||| ||| || || || || | ||| || | || || Sbjct 9083262 CAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTC 9083203 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || | ||| || || ||||| ||||| || || || || || Sbjct 9083202 CTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAGGCCTCAGC 9083158 >seq473 Length=28832112 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| Sbjct 26415903 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGA 26415844 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||||| Sbjct 26415843 GCGTGGGTTCGAACCCCACACCTGACAA 26415816 Score = 111 bits (122), Expect = 2e-19 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 5218646 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAGC 5218587 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||| |||| | || || Sbjct 5218586 GTGGGTTCGAACCCCACACCTGGCAAAGTTTTTTT 5218552 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 26564245 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 26564186 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||| |||| Sbjct 26564185 CGTGGGTTCGAACCCCACACCTGGCAAA 26564158 >seq941 Length=2377 Score = 111 bits (122), Expect = 2e-19 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 460 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAGC 401 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||| |||| | || || Sbjct 400 GTGGGTTCGAACCCCACACCTGGCAAAGTTTTTTT 366 >seq61 Length=22324452 Score = 104 bits (114), Expect = 3e-17 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| ||||||| | | |||| Sbjct 20199738 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCCCTGGTTCTCGTGAGAGAGC 20199797 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||| ||| Sbjct 20199798 GTGGGTTCGAACCCCACACCTGGCAA 20199823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556804257746520