Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 3e-16 >seq1 Length=21770863 Score = 95.1 bits (104), Expect = 3e-16 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393 |||||| ||| |||||||| | |||| ||| || || |||||||||||||| || Sbjct 14456466 CCCATGGCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCCATCC 14456407 Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453 ||| || | | | |||| || || ||| | || || ||| | |||||||||||| Sbjct 14456406 GGCAGTGTGCAGACCCACGATGGTCTGTGCGTGCTGCCCCTGAATATTGTCAACGAGAAG 14456347 Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| | ||||| |||||||||||| Sbjct 14456346 ATCTACGTGTTCCTGTGGTTCTGGTTC 14456320 Score = 86.0 bits (94), Expect = 2e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAG-TCTCCATCGACAATGTATTCTTCCGGTTG 2733 |||| |||||| | | ||| | | | ||| | | |||||||||| |||| || || Sbjct 14457125 CCGTCAAGGGCCTGCTGAAGAT-CGACCAGGTGTGCATCGACAATAATGTCTTTCGCATG 14457067 Query 2734 CATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAG 2793 || ||| || ||| |||||||| || ||||| || |||||||||||||| ||||| || Sbjct 14457066 CACTACAAGGCCACGGTGATCATACTGATCGCCTTCTCATTGCTGGTGACCTCGCGCCAA 14457007 Query 2794 TACTTCGGAAAGCTCATAGATTGC 2817 ||| |||| | | ||| |||||| Sbjct 14457006 TACATCGGTGACCCCATCGATTGC 14456983 Score = 82.4 bits (90), Expect = 2e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| || ||||| || || || || |||| |||| ||||||||| Sbjct 14482062 TGCACCTTCCACAAGTATGGTCCATCTGGTTCGCTACAAAAGCACGACTCCCTCTGCATC 14482121 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCT 3481 || ||| |||| | || |||||||||| ||| | ||| ||||||||||||||| Sbjct 14482122 CTGCCGCTGAACATTGTGAACGAGAAGACGTACGTGTTCATCTGGTTCTGGTTCT 14482176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12478891210500