Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq119 109 5e-19 seq67 96.9 3e-15 seq61 96.9 3e-15 seq5 84.2 2e-11 seq1 84.2 2e-11 >seq119 Length=24197627 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 4460607 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 4460666 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || ||| |||| |||||||| || || ||| Sbjct 4460667 GACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGA 4460726 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| |||||| | | || Sbjct 4460727 GGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCA 4460786 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||||||||| || || || |||||||| Sbjct 4460787 ACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 4460836 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 4459120 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 4459179 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || ||| |||| |||||||| || || ||| Sbjct 4459180 GACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGA 4459239 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| |||||| | | || Sbjct 4459240 GGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCA 4459299 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||||| ||| || || || |||||||| Sbjct 4459300 ACTTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 4459349 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 4460835 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 4460894 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || ||| |||| |||||||| || || ||| Sbjct 4460895 GACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGA 4460954 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| |||||| | | || Sbjct 4460955 GGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCA 4461014 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||||| ||| || || || |||||||| Sbjct 4461015 ACTTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 4461064 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || || || || |||||||||||| || || || ||||| Sbjct 4460399 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 4460458 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||| || || ||| |||| |||||||| || || |||||||| || || ||||| Sbjct 4460459 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTG 4460518 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | |||| |||||| | | || || |||| ||| | || || Sbjct 4460519 GATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTT 4460578 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||||||| || || || |||||||| Sbjct 4460579 TCCGGTCAGAGTCTTCACGAAGATCTGCAT 4460608 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||| || Sbjct 4459555 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCA 4459614 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| ||||| || || ||| |||| |||||||| || || || Sbjct 4459615 GACAGGGTGCGTCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 4459674 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | |||| |||||| | | || Sbjct 4459675 GGGATTCCCTCCTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGACGGCTCA 4459734 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||||||||| || || || |||||||| Sbjct 4459735 ACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 4459784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 4459783 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 4459842 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || ||| |||| |||||||| || || || Sbjct 4459843 GACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 4459902 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | |||| |||||| | | || Sbjct 4459903 GGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGACGGCTCA 4459962 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || ||||||||||| || || || |||||||| Sbjct 4459963 ACCTCCAAAGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 4460012 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | ||| || ||| || || ||||| || Sbjct 4458697 GTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCCTCTAGCTGTTTGCCG 4458756 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| || || |||||||| || || ||||| ||||| || Sbjct 4458757 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTC 4458816 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || |||| ||| | || || ||||||| ||| Sbjct 4458817 ACATTCTCAATGGTGTCTGAAGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCAAAGTC 4458876 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 4458877 TTCACGAAGATCTGCAT 4458893 >seq67 Length=2158 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || || || | || || || || |||||||| || || Sbjct 1168 ACCACCACGCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 1109 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| || || || |||||| |||| |||||||| || || ||||| Sbjct 1108 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 1049 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| |||||| ||| | | ||| | || || | | |||||| Sbjct 1048 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGAC 989 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| || || || || || || |||||||| Sbjct 988 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 941 >seq61 Length=22324452 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || || || | || || || || |||||||| || || Sbjct 13090701 ACCACCACGCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 13090642 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| || || || |||||| |||| |||||||| || || ||||| Sbjct 13090641 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 13090582 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| |||||| ||| | | ||| | || || | | |||||| Sbjct 13090581 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGAC 13090522 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| || || || || || || |||||||| Sbjct 13090521 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 13090474 >seq5 Length=900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || || || | || || || || || |||||||| ||| Sbjct 395 ATGCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 336 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || || ||| |||| | |||||| || || || Sbjct 335 GACAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGG 276 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | ||| |||| | || Sbjct 275 GGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCA 216 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || |||||||||||||| || || || ||||||||| Sbjct 215 ACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || || || | || || || || || |||||||| ||| Sbjct 623 ATGCCACCACGCAGACGCAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 564 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || || ||| |||| | |||||| || || || Sbjct 563 GACAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGG 504 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | ||| |||| | || Sbjct 503 GGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCA 444 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || |||||||||||||| || || || ||||||||| Sbjct 443 ACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 393 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || || || | || || || || || |||||||| ||| Sbjct 851 ATGCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 792 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || || ||| |||| | |||||| || || || Sbjct 791 GACAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGG 732 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | ||| |||| | || Sbjct 731 GGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCA 672 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || |||||||||||||| || || || ||||||||| Sbjct 671 ACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 621 >seq1 Length=21770863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || || || | || || || || || |||||||| ||| Sbjct 2175849 ATGCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2175908 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || || ||| |||| | |||||| || || || Sbjct 2175909 GACAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGG 2175968 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | ||| |||| | || Sbjct 2175969 GGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCA 2176028 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || |||||||||||||| || || || ||||||||| Sbjct 2176029 ACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 2176079 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || || || || | || || || || || |||||||| ||| | Sbjct 2175624 CCACCACGCAGACGCAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2175683 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||||| || || || || ||| |||| | |||||| || || || || Sbjct 2175684 AGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 2175743 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || | | || | ||| |||| | || || Sbjct 2175744 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 2175803 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| ||| | || |||||||||||||| || || || ||||||||| Sbjct 2175804 TCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 2175851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420092807088276