Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq61 345 8e-90 seq104 297 4e-75 >seq61 Length=22324452 Score = 345 bits (382), Expect = 8e-90 Identities = 1231/1898 (65%), Gaps = 82/1898 (4%) Strand=Plus/Plus Query 243736 CACGCTGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 |||| ||||||| | || | || | || | ||| || | ||| |||||||| ||||| | Sbjct 13004071 CACGGTGAACTGAATGGCATTCG-CAGCTGGCTTTGTGCGCAGATAGTACATTCCGGTTT 13004129 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 |||| ||| ||||| || || ||| |||| ||||| || || || |||| Sbjct 13004130 TGAGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTT-----TCCGTAG-TTTG 13004183 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 | || || ||| || ||||| ||||| ||||| || | ||||| | || | Sbjct 13004184 GCTCTGCC----ACATGAAT--GTTGAATGACTGACTCTGATCTATGAAGGCACCACGAT 13004237 Query 243915 CTGCGGCCATGGTGATGAGGTCCTT--CTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 | |||||||| | || | ||| ||||||| || || || ||||||||||| | Sbjct 13004238 CGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACAC--CGTCTTGTAGA-GAT 13004294 Query 243973 CTTGAGG-TGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG-TGGACGATGAGC 244030 | || | || ||||| | |||||||| || | |||||| | |||| |||| | Sbjct 13004295 CGCGAACCTTCTGGGGGATGGCCTCGATGTTTTGGATTGAGCCCCGGCTGGAT-ATGATC 13004353 Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC---AGCGCCTCG-ACCAGGTG 244086 ||| | ||||| |||| ||||| | ||| |||| || | | || | || || Sbjct 13004354 TGGTTCTTCATGTCGTCGTCCCACAAGTCCA---GCTCGGTTAG-GTCGCGCAGCAAATG 13004409 Query 244087 CCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAG 244146 ||| ||||||||||| || || ||||| || || | ||| | ||| || | Sbjct 13004410 ATGGTTGACCACCTGAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATA 13004469 Query 244147 CGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGA 244206 ||||||| | || ||||||||| ||||| || ||| ||||| ||||| || | Sbjct 13004470 GGGCTCGAAGGATTCATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGC 13004529 Query 244207 CACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAG 244264 |||||||| ||||| ||||||||| || |||| || || | || | | |||| Sbjct 13004530 AACCAGCAGGGAGTTCCGGACGCCGTGCTGCTTGATG--GACTCCTTCAGTTTCTGCCAG 13004587 Query 244265 TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCC 244324 ||||| | | || || ||| | |||||||||| |||||| | ||| Sbjct 13004588 TCCCAGAGGTTCGTTGGGACCTTGT---------CCCACATGTCGTACTGCAAAATTCCC 13004638 Query 244325 TTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAG 244384 ||||| || ||||||||||||||||| ||| ||||| || ||||||||| | |||| Sbjct 13004639 TTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAG 13004698 Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGC- 244443 || | || | |||| | ||||| ||||| ||||| ||| || |||| | ||| Sbjct 13004699 CTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAAAATCTGCTGATTCAACAGACCGGCT 13004758 Query 244444 -CTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGC 244502 ||| | | | | |||| | ||| | || | |||| || | |||||| || | Sbjct 13004759 TCTTCACTCTCAT--ATGGGAATCGCATGAGGATCAGCGCGTCAGCGAATCCCTGAACAC 13004816 Query 244503 CGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGT 244562 | ||||| | ||| | ||| | | ||||| | | || || |||| ||| ||| ||| Sbjct 13004817 CAATGCCAACGGGACGGTGCCTCAAATTGGACTTCTTTGCCTCTGGCAGGGGATAATAGT 13004876 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622 || || || | |||||| || || || | || | ||| || ||| || Sbjct 13004877 TGATATCAATAATCTTGTTAAGATTTTTTGTAACTATCTTGGTGACTTCCTTTAGCTTCT 13004936 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 || || ||| || || || || | |||||| ||||||||||| Sbjct 13004937 TGAAATCATAC--------GTCTTCTCCGGTG-------TGACAAACATGTTGAGGGCGA 13004981 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 | || ||||||||||| || | ||| |||| || ||| | || || || |||| Sbjct 13004982 TGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCGCGGAGTATTCAACGATTTCCGTGC 13005041 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 | | ||| ||||||||||||||||| | | ||| |||||| ||| |||||| |||| Sbjct 13005042 ACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCACGCGT 13005101 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||| |||||||| | || || || || | || || | | || | ||| | Sbjct 13005102 CCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGATGGCAAACCACA 13005161 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 || |||||| ||||| | | || ||||| |||||| ||||| Sbjct 13005162 GGGATTGAGCCTTAACCGTTCGGTTGGCACGACCCTCCTGCTCGTATTTCTCATACAGCT 13005221 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982 ||||| || |||||| || || | ||||| ||||| ||||||||||| Sbjct 13005222 TTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTGTGGGGGCACATGAGCG 13005281 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 ||| ||||| | ||| || | | ||||||||| ||||| ||||| ||||| | | Sbjct 13005282 ACCAATCGCCATTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 13005341 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 |||| || | || | | ||| ||| ||||||||| ||| |||| |||| || |||| Sbjct 13005342 AGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTGTTTTTCTTCAGTTCCAGGAACTCAA 13005401 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 |||| || |||||| || |||| ||| | || | ||| ||||| |||||| ||||| Sbjct 13005402 AGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTC 13005461 Query 245163 CCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 |||| ||||| | | | | |||||||| | ||| | || || | || || | Sbjct 13005462 CCTGATCCACATAACGCGCCACATTGTTGAAGACCCTCAGCATGGGAACCAACCCATTGG 13005521 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC---- 245278 | ||||| ||||| ||| ||| |||||| | | | ||| ||| || Sbjct 13005522 ACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTTGCAC---GAATGC-AATGCACGTTG 13005577 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | ||| | || || || ||||||||| | ||||| || | | | |||| Sbjct 13005578 AGGCCGATGCCACCAGCAGACTTGGAGATCATAGCGCACTGCTCCACAGACTTGAATATG 13005637 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG----GGGCTT 245394 ||||| ||| ||| | ||||| | ||||| || || || |||||||| || || Sbjct 13005638 CCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAACACGACGACAGCTGCGGACGGTTT 13005697 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAA 245454 | ||| || | ||||| ||||| || || || |||||||| |||||||| Sbjct 13005698 GTGGCAGC----GGCAAACAGCGTGGGCGATGCATGCGTGAAGTAGCGCTCCGAGAGGAG 13005753 Query 245455 CCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCA 245513 ||| || | | || || |||| || || ||||| | || ||| | || Sbjct 13005754 ATTGTAGGTTTCCACGGCCGCATCAATGTCCTCTCCATGGATTCCGATCGC-CACGCGCA 13005812 Query 245514 TGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT-CGGGTCCCTTGAGCATGTAGGAGCGC 245572 | || ||||||| || |||| | || | || || |||||||| ||||||||| Sbjct 13005813 TCAGCATGTGCTGTGGTCGCTCG-GCGATCTTTCCGTTTCTCTTGAGCAGATAGGAGCGC 13005871 Query 245573 TCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTC 245610 || || ||||| || ||||| || ||||||||||| Sbjct 13005872 TCCAGGGTCTTAAAGCCAAAATAGTTATAGCCAAAGTC 13005909 >seq104 Length=21139217 Score = 297 bits (328), Expect = 4e-75 Identities = 556/805 (69%), Gaps = 29/805 (4%) Strand=Plus/Plus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| ||||||| | || || |||||||| | | |||| ||| | |||| Sbjct 9083172 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGG----CACCGCCTGA 9083227 Query 42395 -GAACGAAAAGTT---TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 | |||| || |||| || || | |||||||||||||||||||| || |||| Sbjct 9083228 AGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCA 9083287 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | || || ||||| |||| | |||| | ||||||||| | ||||| |||| Sbjct 9083288 TCGTAAACGAGAATCTGGTGGAACGCTTCAGTCAGGAGGTGCAGATCACAGAGGCACGCT 9083347 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 ||||||||||||| ||||| ||||| |||||||||||||| ||| ||||| ||| Sbjct 9083348 GCTTCTACGGCTTTCAGATTGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTGCTGA 9083407 Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630 || |||| ||||||| |||||| | |||| | |||||||| || || || |||| Sbjct 9083408 TCGACACTTACATCCGGGATCCGCACCAGCGAGAGTACCTGTTCAACGCTATTGAAACGA 9083467 Query 42631 TGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGA-----TCGAGAGTCCC 42683 |||| ||| | ||| ||||| |||||||| || ||||| || | |||| Sbjct 9083468 TGCCGGCTG--TGAAGCGCAAGGCAGACTGGGCCCTTTCCTGGATTTCCTCTA-AGTC-- 9083522 Query 42684 GACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCG 42743 || | || || ||| | | | |||||| ||||||| ||||||||||| ||| Sbjct 9083523 --GGCCAATTTTGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTTTTCAGC 9083580 Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTT 42802 ||| ||||||||| || |||||||| ||| || ||| | ||||| ||||| ||||| Sbjct 9083581 GGCAGCTTCGCCTCTATTTTCTGGCTTAAGAAGCGCGGTCT-TATGCCTGGACTGACCTT 9083639 Query 42803 CTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862 ||| ||||| || ||| | |||||||| |||| | ||||||||| || |||| Sbjct 9083640 CTCCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTT 9083699 Query 42863 CTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGC 42922 | | ||||| ||| ||| | ||||| || | |||||| || || Sbjct 9083700 CCAG---CACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCGCGACGC 9083756 Query 42923 CGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA 42982 |||| ||| ||| |||| |||||||| | | ||||| || | |||||||||| Sbjct 9083757 AGTGGCGATTGAGCAGGAATTCCTCACCGATGCCCTGCCTGTTAATTTAATCGGCATGAA 9083816 Query 42983 CCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGG 43041 ||||| |||| | ||||||| ||| ||| || || | | | | |||| || ||| Sbjct 9083817 TTGTGACCTGATGTCCCAGTACATAGAGTTCGTGGCGGATCGTTTGCTTGTG-GAGTTGG 9083875 Query 43042 GTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGG 43101 | | | |||||||||| | ||||||| |||| ||||||| || ||| ||| Sbjct 9083876 GCGTTGGGAAGATCTACAACACCAAGAACCCCTTCAACTTCATGGAGATGATATCGCTGG 9083935 Query 43102 AGGGCAAGACCAACTTTTTCGAGAA 43126 | || |||||||||||||| ||||| Sbjct 9083936 ATGGAAAGACCAACTTTTTTGAGAA 9083960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944243314158480