Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq104 96.9 4e-15 >seq104 Length=21139217 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967 |||||||| ||| | | || || ||||||||||| | || ||||| ||||| || ||| Sbjct 5947162 TCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGAGGCTCAAGCAGATTAATGTTG 5947221 Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 172026 || | ||||| ||| | ||| | || || || || ||| || ||||| || || || Sbjct 5947222 TTGGCACCCACAAAGTTCTGGGCTAGATTCACGATTGTCATCTGC-AGGGAAACCTCTCC 5947280 Query 172027 GTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATC 172086 ||| |||||||| ||| | || || || | | | | ||| || ||||| | |||| Sbjct 5947281 GTGGTGGTAGGCTGACATCTCGGCCACCGATCCGGATAGCTGGGCTACCTTAACCTCACG 5947340 Query 172087 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 |||| ||| | | ||||| | |||| ||||||| ||| ||||| | |||||| Sbjct 5947341 CTTGTCGTTTCTCTTAAAGCAAGTGAACATCACCTTTCGCTGACCCGGCTTTAAGCCGTC 5947400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597292946208840