Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq61 174 2e-38 >seq61 Length=22324452 Score = 174 bits (192), Expect = 2e-38 Identities = 913/1449 (63%), Gaps = 39/1449 (3%) Strand=Plus/Minus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 || ||| |||| |||||||||||| |||| | | |||||||||||| || || ||| Sbjct 13005690 CCGCAGCTGTCGTCGTGTTTCCTGCTGACCATGACTGCCGACTCCATCGAGGGCATATTC 13005631 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 | | || | || || | ||||| || | || || || ||||| ||| || Sbjct 13005630 AAGTCTGTGGAGCAGTGCGCTATGATCTCCAAGTCTGCTGGTGGCATCGGCCTCAACGTG 13005571 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 || | | ||||| | ||| ||| ||| | || || || || || ||||| || | Sbjct 13005570 CATTGCATTCGTGCAAAGGGCACCTCCATTTGTGGCACAAACGGAACGTCCAATGGGTTG 13005511 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||||| ||||||||||||| | |||||| || ||||| ||||| || || | | Sbjct 13005510 GTTCCCATGCTGAGGGTCTTCAACAATGTGGCGCGTTATGTGGATCAGGGAGGCGGCAAG 13005451 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||| | || || | || || || || |||||| |||| || | ||| | Sbjct 13005450 CGTCCCGGTGCCTTTGCCATTTACCTGGAACCTTGGCACTCGGATGTCTTTGAGTTCCTG 13005391 Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTC 94287 || ||| || ||| ||||| || | | | ||| | || ||||| ||||| || Sbjct 13005390 GAACTGAAGAAAAACACTGGCAAGGAAGAGAATCGCGCCCGCGATCTCTTTTACGCCCTG 13005331 Query 94288 TGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGT 94347 ||| | || || || || ||||||||||| ||| || || ||| || | || Sbjct 13005330 TGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAATGGCGATTGGTCGCTCATGTGC 13005271 Query 94348 CCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCG--CGTTTTGAAGACTTGTATG 94405 ||| | |||| || || | ||| | | ||||| || || ||| | |||||| Sbjct 13005270 CCCCACAAATGCCCTGGCC--TCCAAGATGTGTGGGGCGATGAATTCGAAAAGCTGTATG 13005213 Query 94406 CTCGTTACGAATCGCAGGGCAAGGCCA---GGAAGGTTATGGATGCTAGGAAGCTGTGGG 94462 ||||| | |||| |||| | | ||||| | ||| |||||| Sbjct 13005212 AGAAATACGAGCAGGAGGGTCGTGCCAACCGAACGGTTA---AGGCTCAATCCCTGTGGT 13005156 Query 94463 ATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTG 94522 | ||| | || | || ||||| || || | || ||||| | ||||||||| | Sbjct 13005155 TTGCCATCATTGAGGCGCAAGTGGAAACTGGAAATCCGTACATGCTCTTCAAGGACGCGT 13005096 Query 94523 TCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCG 94582 |||| ||| ||| |||||| | | || |||||| || || ||||||| | Sbjct 13005095 GCAACAGGAAGAGCAATCAGCAGAATGTTGGCACCATCAAGTGCAGCAACTTGTGCACGG 13005036 Query 94583 AGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACC 94642 | || || || || | | ||||| ||||| || || || ||||| | |||||| || Sbjct 13005035 AAATCGTTGAATACTCCGCGCCGGATGAGATAGCAGTCTGCAACCTTGCATCCATCGCCC 13004976 Query 94643 TGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTG 94702 | || || || | | | |||| | ||| | || |||| Sbjct 13004975 TCAACATGTTTGTCACACCGGAGAAGACGTAT------------GATTTCAAGAAGCTAA 13004928 Query 94703 TGAACTTCGCGGGAAGGATGGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTCT 94759 | | || | | ||| || || || |||| | | || || | |||| | Sbjct 13004927 AGGAAGTCAC---CAAGATAGTTACAAAAAATCTTAACAAGATTATTGATATCAACTATT 13004871 Query 94760 ACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCC 94819 | ||| | || ||||| |||| || || ||| ||| || ||| | ||||| || || | Sbjct 13004870 ATCCCCTGCCAGAGGCAAAGAAGTCCAATTTGAGGCACCGTCCCGTTGGCATTGGTGTTC 13004811 Query 94820 AGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGG 94879 |||| ||||| ||||||||| | | ||||| | || || || || || || | Sbjct 13004810 AGGGATTCGCTGACGCGCTGATCCTCATGCGATTCCCATATGAGAGTGAAGAAGCCGGTC 13004751 Query 94880 GTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCAC 94938 |||||| | | || ||||||| |||||| || || ||| | ||| | | | || || Sbjct 13004750 TGTTGAATCAGCAGATTTTCGAAACCATTTACTATGGCGCCTTGGAAGCCAGCTGTGAAC 13004691 Query 94939 TTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGG 94997 | | ||| || | || ||| ||||| | | || || |||| || | |||| Sbjct 13004690 TGGCCCA----GGCTGAGGGTCCATACGAAAC-CTACGAGGGCAGCCCGGTGAGCAAGGG 13004636 Query 94998 CATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGCT 95055 ||||| |||| |||| | |||| | || || || | |||||| ||| || Sbjct 13004635 AATTTTGCAGTACGACATGTGGGACAAGGTCCCAACGAACCTCTGGGACTGGCAGAAACT 13004576 Query 95056 CTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCC 95115 | | | | | | | ||||| || ||| | ||||| || || || |||||| Sbjct 13004575 GAAGGAGTCCA--TCAAGCAGCACGGCGTCCGGAACTCCCTGCTGGTTGCTCCGATGCCC 13004518 Query 95116 ACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAAC 95175 || || ||||| || ||||| | |||||||| || || ||||| |||| ||| | ||| Sbjct 13004517 ACTGCTTCCACAGCTCAGATTATGGGCAACAATGAATCCTTCGAGCCCTATACCACGAAC 13004458 Query 95176 GTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGG 95235 | |||| |||||| || || |||| ||||| | || ||||| | || | || || Sbjct 13004457 ATATACACCAGGCGAGTTCTGTCCGGCGAATTTCAGGTGGTCAACCATCATTTGCTGCGC 13004398 Query 95236 GACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAAC 95295 ||||| || |||| |||||| ||| | | |||||||| | || | | Sbjct 13004397 GACCTAACCGAGCTGGACTTGTGGGACGACGACATGAAGAACCAGATCATATCCAGCCGG 13004338 Query 95296 GGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTG 95355 ||||| |||| |||||| | || || || | | | ||||||||||| ||| Sbjct 13004337 GGCTCAATCCAAAACATCGAGGCCATCCCCCAGAAGGTTCGCGATCTCTACAAGACGGTG 13004278 Query 95356 TGGGAGATC 95364 ||||| ||| Sbjct 13004277 TGGGAAATC 13004269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494672967043080