Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq473 96.9 3e-15 >seq473 Length=28832112 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||| | ||| || | ||||| ||||| ||||| || ||| || || || ||||| Sbjct 26946031 TGGGTTCGCGACCATCGAGTTCATCACAAATACTCGGAGACGGATGCGGATCCCCACAAT 26945972 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 |||||||| || |||| |||||||||||||| ||||| |||||| ||| | || || Sbjct 26945971 GCCAACAGAGGCTTCTTCTTCTCGCACGTGGGCTGGCTGATGATGCTGAAGCATCCGGAG 26945912 Query 108586 GTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGTAGT 108644 || | || | |||||| | || ||||||| ||||| ||||||| ||||| Sbjct 26945911 GT-ACTGCGTCGCGGTCGCCAGATCGACATGAGCGACATTCTGGCCGATCCCGTGGTGCG 26945853 Query 108645 GTGGCACACCAAGTACTTTATTCCTCTTAA 108674 | ||| |||||||| || || || || Sbjct 26945852 CTTCCACCAGAAGTACTTCATCCCCCTGAA 26945823 Score = 93.3 bits (102), Expect = 3e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct 13413611 TCGGCGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCCGAGC 13413670 Query 108947 TGGG 108950 |||| Sbjct 13413671 TGGG 13413674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCA--CCGCCCCGTTCA 108412 || ||||| || ||||| ||||| ||||||| ||||||||||||| | ||| | || Sbjct 13412868 ACAGCCGGAGTGCATCGTCTGTGGTCCCACAAGGCCTACAAGGCCAAGCTGCCAC--TCC 13412925 Query 108413 GGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGC 108472 | | ||||| ||| || || |||| ||||||| |||| | ||||| | Sbjct 13412926 GCATCTTCCTCATGCTGTGTCAGTCCCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCC 13412985 Query 108473 TCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACA 108532 || ||| | || |||||||||| | | ||||| ||||| || |||||| || Sbjct 13412986 GTGACCACCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCCCGAC 13413045 Query 108533 GGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 | || |||| ||| | ||| |||| ||||| ||| | ||| ||||||| |||| Sbjct 13413046 GAGGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGATGTGA 13413102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 108879 GTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGC 108938 |||||| | ||||||||||||||||||||||||||||| ||||||| || |||||||| Sbjct 26945505 GTTGGCCATGGGCGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGATTACAAGGC 26945446 Query 108939 CGCCGAGTTGGGGAACGAC 108957 || ||| |||| ||| || Sbjct 26945445 AGCTGAGCTGGGCAACTAC 26945427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381735004850712