Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq61 282 4e-71 seq119 82.4 7e-11 >seq61 Length=22324452 Score = 282 bits (312), Expect = 4e-71 Identities = 1151/1800 (64%), Gaps = 48/1800 (3%) Strand=Plus/Minus Query 122897 AAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACG 122956 |||| ||||||| || || || ||||| |||||||| || || || | || ||| Sbjct 13005844 AAAGATCGCCGAGCGACCACAGCACATGCTGATGCGCGTGGCGATCGGAATCCATGGAGA 13005785 Query 122957 CGACATCGAAAACGCGACCG---AAACTTACGATTTGATGTCTCAAAAATTTTTCACGCA 123013 ||||| || ||| ||| |||| ||| || | | || | | |||||||| Sbjct 13005784 GGACATTGAT---GCGGCCGTGGAAACCTACAATCTCCTCTCGGAGCGCTACTTCACGCA 13005728 Query 123014 CGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTT 123073 || ||||| |||| ||||| | ||| || || ||| |||| |||||||| | Sbjct 13005727 TGCATCGCCCACGCTGTTTGCCGCTGCCACAAACCGTCCGCAGCTGTCGTCGTGTTTCCT 13005668 Query 123074 GCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTT 123133 ||| ||| || | ||| |||| || || | | || || | ||||| | Sbjct 13005667 GCTGACCATGACTGCCGACTCCATCGAGGGCATATTCAAGTCTGTGGAGCAGTGCGCTAT 13005608 Query 123134 GATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAG 123193 ||| ||||| | || || ||||| ||| | |||||||| | | | | || | Sbjct 13005607 GATCTCCAAGTCTGCTGGTGGCATCGGCCTCAACGTGCATTGCATTCGTGCAAAGGGCAC 13005548 Query 123194 CCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAA 123253 | ||| | |||| |||||| || ||| | | |||||||| | || | ||| Sbjct 13005547 CTCCATTTGTGGCACAAACGGAACGTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTCAA 13005488 Query 123254 TAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTA 123310 || | | ||| | || || ||||| |||||| || || || | || || || Sbjct 13005487 CAATGTGGCGCGTTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTA 13005428 Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGC 123370 || ||||| |||||| ||||| | || || | | | || |||| || Sbjct 13005427 CCTGGAACCTTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAAAACACTGGCAA 13005368 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 |||||| || ||||||||| | || ||||| | ||| |||||||| | || ||| Sbjct 13005367 GGAAGAGAATCGCGCCCGCGATCTCTTTTACGCCCTGTGGATACCCGATCTCTTCATGAA 13005308 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAG 123490 |||||| | | | | |||| |||||||||||||| ||| | || || ||| | Sbjct 13005307 ACGCGTGGAGGCCAATGGCGATTGGTCGCTCATGTGCCCCCACAAATGCCCTGGCCTCCA 13005248 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG------ 123544 || || | ||| || | || || || |||| | | ||||||||| || || Sbjct 13005247 AGATGTGTGGGGCGATGAATTCGAAAAGCTGTATGAGAAATACGAGCAGGAGGGTCGTGC 13005188 Query 123545 CAAACA---GGTTAGTCAGGTTCCGGCAC-GTGATTTGTTCAAATTTATTATCGAAACAC 123600 ||| | ||||| ||| || | | ||| |||| || || || | | Sbjct 13005187 CAACCGAACGGTTA---AGGCTCAATCCCTGTGGTTTGCC-------ATCATTGAGGCGC 13005138 Query 123601 AAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATC 123660 |||| ||||| |||| ||||||||||||| ||| ||||| ||||||||||| | ||||| Sbjct 13005137 AAGTGGAAACTGGAAATCCGTACATGCTCTTCAAGGACGCGTGCAACAGGAAGAGCAATC 13005078 Query 123661 AGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCG 123720 || || | || || || || || || || | ||| | ||||| | |||||| || Sbjct 13005077 AGCAGAATGTTGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATACTCCG 13005018 Query 123721 ATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAA 123780 | ||| | | || || || || | || || || | | || | ||| | | Sbjct 13005017 CGCCGGATGAGATAGCAGTCTGCAACCTTGCATCCATCGCCCTCAACATGTTTGTC-ACA 13004959 Query 123781 ACGGCG----CTTTTAATTTCCAAACGCTCAAACGCA-TAACAAAAACTGTAGTAAAGAA 123835 ||| | | | | ||||| | | ||| ||| | | | || || | || ||| || Sbjct 13004958 CCGGAGAAGACGTATGATTTCAAGAAGCT-AAAGGAAGTCACCAAGATAGTTACAAAAAA 13004900 Query 123836 TTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTT 123895 | | ||||| ||||| ||| | || | |||||| || || || ||| ||||| Sbjct 13004899 TCTTAACAAGATTATTGATATCAACTATTATCCCCTGCCAGAGGCAAAGAAGTCCAATTT 13004840 Query 123896 GAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCG 123955 || ||| | || || || | || |||| || || || |||||| | | | |||| Sbjct 13004839 GAGGCACCGTCCCGTTGGCATTGGTGTTCAGGGATTCGCTGACGCGCTGATCCTCATGCG 13004780 Query 123956 CATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTA 124015 | || || || || || ||||| || | ||| ||| || |||||| ||||| Sbjct 13004779 ATTCCCATATGAGAGTGAAGAAGCCGGTCTGTTGAATCAGCAGATTTTCGAAACCATTTA 13004720 Query 124016 TTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTA 124075 || ||||| ||||| || ||||| ||||| || | | | || | ||||||| || Sbjct 13004719 CTATGGCGCCTTGGAAGCCAGCTGTGAACTGGCCCAGGCTGAGGGTCCATACGAAACCTA 13004660 Query 124076 CGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGAC 124135 || ||||||||||| |||| || ||||||||||||||||||||| | || || Sbjct 13004659 CGAGGGCAGCCCGGTGAGCAAGGGAATTTTGCAGTACGACATGTGGGACAAGGTCCCAAC 13004600 Query 124136 AAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTC 124195 || | ||||||||| | || | ||| | |||||| | || ||||| Sbjct 13004599 GAACCTCTGGGACTGGCAGAAACTGAAGGAGTCCATCAAGCAGCACGGCGTCCGGAACTC 13004540 Query 124196 GCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATC 124255 ||| |||| || ||||| || || |||| ||||| ||| | || ||||| ||||| Sbjct 13004539 CCTGCTGGTTGCTCCGATGCCCACTGCTTCCACAGCTCAGATTATGGGCAACAATGAATC 13004480 Query 124256 CTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 ||||||||| | || | || | ||| | ||||| | ||||||| ||||| || Sbjct 13004479 CTTCGAGCCCTATACCACGAACATATACACCAGGCGAGTTCTGTCCGGCGAATTTCAGGT 13004420 Query 124316 GATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCG 124375 | | || ||||||||| || |||| | | | | | |||| || || ||||| Sbjct 13004419 GGTCAACCATCATTTGCTGCGCGACCTAACCGAGCTGGACTTGTGGGACGACGACATGAA 13004360 Query 124376 CAACGAAATTAT-TGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACG 124434 ||| | || || | | ||||| ||| | || ||||| | || || | | | Sbjct 13004359 GAACCAGATCATATCCAGCCGG-GGCTCAATCCAAAACATCGAGGCCATCCCCCAGAAGG 13004301 Query 124435 TCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAAATG 124490 | | || ||||| || ||||||||||| | || | ||||||| ||||| Sbjct 13004300 TTCGCGATCTCTACAAGACGGTGTGGGAAATCTCAGTCAAGTCCACGATTA----AAATG 13004245 Query 124491 GCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAA 124550 |||| ||| || || || | || ||||| ||||| || || ||| | ||| || || Sbjct 13004244 GCCGCCGATCGTGGTGCCTTCATAGATCAGAGTCAGTCATTCAACATTCATGTGGCAGAG 13004185 Query 124551 CCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAAAAC 124609 || | ||||| ||||| ||||||| | || | |||| ||| || |||||||| Sbjct 13004184 CCAAACTACGGAAAACTGACCTCCATACACTTCTACTCCTGGA-AAGCTGGTCTCAAAAC 13004126 Query 124610 GGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669 || ||||| || | | || || || || || |||||||||| || ||||| |||| Sbjct 13004125 CGGAATGTACTATCTGCGCACAAAGCCAGCTGCGAATGCCATTCAGTTCACCGTGAACAA 13004066 >seq119 Length=24197627 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||||||||| | | ||| | |||| ||||| ||||| ||||| || ||||| Sbjct 4458664 ATTCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTTGACTCCTTCTGGATGTTGTAATCA 4458723 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | ||||| || ||| | |||| || ||||| || || Sbjct 4458724 GAAAGAGTGCGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGA 4458783 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || ||||| || || || | || | |||||| |||| ||| Sbjct 4458784 GGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCA 4458843 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || || ||||| | ||| || || || || ||||| Sbjct 4458844 ACTTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 4458893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451957304725080