Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq104 219 7e-52 seq61 190 3e-43 >seq104 Length=21139217 Score = 219 bits (242), Expect = 7e-52 Identities = 544/812 (67%), Gaps = 28/812 (3%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| || ||||| |||||||||||||| || |||| ||||| |||||||| ||| Sbjct 9083967 CACCTTTTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTGAA 9083908 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| || ||| |||| || || | || | ||||| | || ||||| Sbjct 9083907 GGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAACTCCACAAGCAAACGATCCGCCAC 9083848 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || || ||||| ||||| | ||||| || || || | | |||| || || || Sbjct 9083847 GAACTCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATTAACAGGCAGGGC 9083788 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTT 159881 || | || || |||| ||||||| | || || ||| | |||| ||| || || | Sbjct 9083787 ATCGGTGAGGAATTCCTGCTCAATCGCCACTGCGTCGCGGATGATCT-CGATGATGCGCT 9083729 Query 159882 CGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-CAAAGTCGCAGTG 159939 || | || | || || | ||| || |||| || |||| ||||||||||||| Sbjct 9083728 CGCGCTTGGG-TCGCTGCACCAGGTG---CTGGAACATCAG-CACGGCAAAGTCGCAGTG 9083674 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || |||||||| |||||||| | ||||||||| | | | || || ||||| | || || Sbjct 9083673 CAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCATAAGACCGCG 9083614 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 | || ||||| ||||| | || || ||||| |||||||| ||||||||||| || Sbjct 9083613 CTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCGCTGAAAAAGATGCCCTCCACGGCGGC 9083554 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCATGGGTCCACCTTTTGGC 160116 ||| || | || | ||| |||||| ||| || | | | |||| ||| Sbjct 9083553 AAAGGCGATGATGCGCTCCCCAAAATTGGCCGACTTAGAGGAA---ATCCAGGAAAGGGC 9083497 Query 160117 CCATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCGTTAAACAATCTGT 160172 ||| || ||| ||||| | || |||||| || | ||||| |||| | Sbjct 9083496 CCAGTCTGCC----TTGCGCTTCACAGCCGGCATCGTTTCAATAGCGTTGAACAGGTACT 9083441 Query 160173 CCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCA 160232 | ||| | | |||| ||| ||| | |||||| |||||| || | ||||| Sbjct 9083440 CTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAGTGCA 9083381 Query 160233 CATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCC 160291 | || || ||||| ||||||||| |||||| | ||||| ||| |||||||||| Sbjct 9083380 CGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAGCGTGCCTCTGTGAT-CTGCACCTCC 9083322 Query 160292 TGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCC 160351 || |||| | || ||||||| | || || | || |||| ||| || ||||| ||| Sbjct 9083321 TGACTGAAGCGTTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCGGCGAAGAAGGCC 9083262 Query 160352 AACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACG 160411 | |||||| ||||||||||| | |||||| | || || | | ||||| || | | Sbjct 9083261 AGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGC---GGTGCCAGTCAGTAAGG 9083205 Query 160412 TCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | || |||||| ||||| || || |||| Sbjct 9083204 TCCTTGGACAAATCCACCTCCTCGACGGTCCA 9083173 >seq61 Length=22324452 Score = 190 bits (210), Expect = 3e-43 Identities = 464/691 (67%), Gaps = 18/691 (3%) Strand=Plus/Plus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891 ||| | |||||| ||| |||||||||||||| ||| | || ||| | | | |||||||| Sbjct 13004058 CCTGCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGT 13004117 Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951 |||| ||||| || || || | ||| ||| | ||| ||||| | |||||| | Sbjct 13004118 ACATTCCGGTTTTGAGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGT 13004177 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGA 204010 ||| || || |||| |||||||| | ||||| || || || ||| ||||| || ||| Sbjct 13004178 AGTTTGGCTCTGCCACATGAATGTTGAATGACTGACTCTGATCTATG-AAGGCACCACGA 13004236 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070 || |||||||| || || ||| ||| || || ||||||||||||||| | | || Sbjct 13004237 TCGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTAGAGATCG 13004296 Query 204071 CTGGTGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCT 204129 | | || || | | | | | || | ||| ||||| | || || | ||| Sbjct 13004297 CGAACCTTCTGGGGGATGGCCT-CGATGTTTTGGATTGAGCCCCGGCTGGATATGA-TCT 13004354 Query 204130 -CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGT 204188 || || | || || |||||| | ||| | | | || || |||| || || ||| Sbjct 13004355 GGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGT 13004414 Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 ||| | |||||| || |||||||| || | | |||| | | ||| |||| | || | Sbjct 13004415 TGACCACCTGAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCT 13004474 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 |||| | || |||||||| | ||||||||| ||| || |||||||| ||||| | | Sbjct 13004475 CGAAGGATTCATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCA 13004534 Query 204309 GCAGGGAGTTGCGCACACCGT----ATTTTTGGAC-CCTGC-GCTTCAGAGAGGTCCAGT 204362 |||||||||| || || |||| || ||||| ||| | | ||| | || |||| Sbjct 13004535 GCAGGGAGTTCCGGACGCCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAGA 13004594 Query 204363 CGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTG 204422 || ||| | || | | ||||||||||| |||| || || || | || || | Sbjct 13004595 GGT---TCG---TTGGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCG 13004648 Query 204423 GGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCA 204482 ||||||||| ||| || || || || | | ||||| | || ||| ||| Sbjct 13004649 GGCTGCCCTCGTAGGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCA 13004708 Query 204483 TGGCGTGATAGTACATGGTCTCAAAGATCTG 204513 |||| |||||| ||||| || || ||||| Sbjct 13004709 AGGCGCCATAGTAAATGGTTTCGAAAATCTG 13004739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795074461928880