Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq119 107 8e-18 seq67 107 8e-18 seq61 107 8e-18 >seq119 Length=24197627 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| || || || || || || || ||||| |||| Sbjct 4460608 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCA 4460549 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 4460548 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4460489 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || ||||| ||||| ||| | || || | ||||| || Sbjct 4460488 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 4460429 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 4460428 ATCCAGAAGGAGTCGACCCTTCACTTGGT 4460400 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| || || || || || || || ||||| | || Sbjct 4459784 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCGTCG 4459725 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || |||||||||||||| ||||| || || ||||| Sbjct 4459724 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAGGAGGGAATCCCCCCAGATCAG 4459665 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || ||||| ||||||||| | || || | || || || Sbjct 4459664 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGACGCACCCTGTCTGACTACAAC 4459605 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 4459604 ATCCAGAAGGAGTCGACCCTTCACTTGGT 4459576 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || || || || || || ||||| |||| Sbjct 4460240 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCA 4460181 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 4460180 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4460121 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || ||||| || |||||| | ||| | | || || || Sbjct 4460120 CAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTTTCTGACTACAAC 4460061 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| |||| |||||||| || Sbjct 4460060 ATCCAGAAGGAGTCAACCCTTCACTTGGT 4460032 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| || || || || || || || ||||| | || Sbjct 4460836 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4460777 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 4460776 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4460717 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || ||||| ||||| ||| | || || | ||||| || Sbjct 4460716 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 4460657 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 4460656 ATCCAGAAGGAGTCGACCCTTCACTTGGT 4460628 Score = 98.7 bits (108), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || || || || || || ||||| |||| Sbjct 4459121 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCA 4459062 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 4459061 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4459002 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || ||||| || || |||||| | ||| | | || || || Sbjct 4459001 CAGCGTCTGATCTTCGCCGGCAAACAGCTCGAGGATGGACGCACTCTTTCTGACTACAAC 4458942 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 4458941 ATCCAGAAGGAGTCGACCCTTCACTTGGT 4458913 Score = 98.7 bits (108), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || || || || || || ||||| | || Sbjct 4459349 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4459290 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 4459289 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4459230 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || ||||| ||||| ||| | || || | ||||| || Sbjct 4459229 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 4459170 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 4459169 ATCCAGAAGGAGTCGACCCTTCACTTGGT 4459141 Score = 98.7 bits (108), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || || || || || || ||||| | || Sbjct 4461064 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4461005 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 4461004 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4460945 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || ||||| ||||| ||| | || || | ||||| || Sbjct 4460944 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 4460885 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 4460884 ATCCAGAAGGAGTCGACCCTTCACTTGGT 4460856 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || || || || || || ||||| | || Sbjct 4458893 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4458834 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 4458833 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4458774 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || ||||| || || |||||| | ||| | | ||||| || Sbjct 4458773 CAGCGTCTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGCACTCTTTCTGATTACAAC 4458714 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| |||| | ||||| || Sbjct 4458713 ATCCAGAAGGAGTCAACTTTGCACTTGGT 4458685 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || || || || || || ||||| | || Sbjct 4461292 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4461233 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 4461232 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4461173 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || || |||||| | ||| | | || || || Sbjct 4461172 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACTCTTTCTGACTACAAC 4461113 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 4461112 ATCCAGAAGGAGTCGACCCTTCACTTGGT 4461084 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || || || || || || ||||| | || Sbjct 4461615 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4461556 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 4461555 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4461496 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || || |||||| | ||| | | || || || Sbjct 4461495 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACTCTTTCTGACTACAAC 4461436 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 4461435 ATCCAGAAGGAGTCGACCCTTCACTTGGT 4461407 >seq67 Length=2158 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || |||||||| || ||| | || Sbjct 941 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 1000 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 1001 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 1060 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || | | || ||||| Sbjct 1061 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 1120 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 1121 ATTCAGAAGGAGTCCACTCTGCACTTGGT 1149 >seq61 Length=22324452 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || |||||||| || ||| | || Sbjct 13090474 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 13090533 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 13090534 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 13090593 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || | | || ||||| Sbjct 13090594 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 13090653 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 13090654 ATTCAGAAGGAGTCCACTCTGCACTTGGT 13090682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975512775255284