Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq61 145 9e-30 seq104 82.4 9e-11 >seq61 Length=22324452 Score = 145 bits (160), Expect = 9e-30 Identities = 928/1468 (63%), Gaps = 44/1468 (3%) Strand=Plus/Plus Query 109401 CTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCAT 109460 ||| | ||| ||||| ||||| || |||||||||||||| ||||| | ||| | || || Sbjct 13004101 CTTTGTGCGCAGATAGTACATTCCGGTTTTGAGACCAGCTTTCCAGGAGTAGAAGTGTAT 13004160 Query 109461 TGAAGAGAGTTTGGAA-AGTGTCGGACTCT-CCATAAACAAGTTCATCGACTGAGACTGA 109518 || | ||||| ||| | | |||| ||| | | ||| | |||||| |||| Sbjct 13004161 GGAGGTCAGTTTTCCGTAGTTTGG--CTCTGCCACATGAATGTTGAATGACTGACTCTGA 13004218 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA--TTTCCC 109576 || ||||| ||||||||| || ||||| | || | |||| | || | |||||| Sbjct 13004219 TCTATGAAGGCACCACGATCGGCGGCCATTTTAATCGTGGACTT--GACTGAGATTTCCC 13004276 Query 109577 AGACAGTCTTGTACAAATTCTTGATATCATC--GGGAATGTCCACGATGTTTTGAATAGA 109634 | || |||||||| | || | || | | || ||| ||| || |||||||||| || || Sbjct 13004277 ACACCGTCTTGTAGAGAT-CGCGA-ACCTTCTGGGGGATGGCCTCGATGTTTTGGATTGA 13004334 Query 109635 GCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTT 109691 ||| | | || | |||| | | |||||| || | ||| | | | || | Sbjct 13004335 GCCCC--GGCTGGAT-ATGATCTGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGT 13004391 Query 109692 GAGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGA 109750 || ||| || ||| ||| | ||||||||| |||||| || | || || | | Sbjct 13004392 TAGGTCGCGCAGCAA-ATGATGGTTGACCACCTGAAATTCGCCGGACAGAACTCGCCTGG 13004450 Query 109751 GGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGG 109810 ||| ||||| || || ||||| ||||| | ||||||||||| | || || || |||| Sbjct 13004451 TGTATATGTTCGTGGTATAGGGCTCGAAGGATTCATTGTTGCCCATAATCTGAGCTGTGG 13004510 Query 109811 AAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCT 109870 |||| |||||||| ||||| | || || ||| |||| || | | ||| | || Sbjct 13004511 AAGCAGTGGGCATCGGAGCAACCAGCAGGGAGTTCCGGACGCCGTGCTGCTTGATGGACT 13004570 Query 109871 CACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCAT--CCCACATATC 109928 | || | | ||| || ||| | || | ||| | ||||||| || Sbjct 13004571 CCTTCAGTTTCTGCCAGTC-------CCAG-AGGTTCGTTGGGACCTTGTCCCACATGTC 13004622 Query 109929 TGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAAC 109988 || | | |||| | || |||| | | | ||||| | |||||| | Sbjct 13004623 GTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCCTCAGC 13004682 Query 109989 CTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGC 110048 || ||||| || | || || | || ||| || || || || ||||| || Sbjct 13004683 CTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAAAATCTGCTG 13004742 Query 110049 ATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAA-AGAATAAACACATCCG 110107 ||||| || | | ||||||| || | || | | | || || || | | | || | Sbjct 13004743 ATTCAACAGACCGGCTTCTTCACTCTCATATGGGA-ATCGCATGAGGATCAGCGCGTCAG 13004801 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTC-GAGCAGTT 110166 | | ||||||||||| | |||| ||| || ||| ||| || || | || || | Sbjct 13004802 CGAATCCCTGAACACCAATGCCAACGGGACGGTGCCTCAAATTGGA-CTTCTTTGCCTCT 13004860 Query 110167 TCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTG 110226 | ||| ||| ||||| || || | | || ||||| || || || |||| ||| Sbjct 13004861 GGCAGGGGATAATAGTTGATATCAATAATCTTGTTAAGATTTTTTGTAACTATCTTGGTG 13004920 Query 110227 ATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGA 110286 | ||| | || || | | |||| ||| || ||||| ||||| | || ||| Sbjct 13004921 ACTTCCTTTAGCTTCTTGAAATCATACG---TCTTCTCCGGTGTGACAAACATGTTGAGG 13004977 Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346 || || || ||||| ||||| || | |||| || ||| |||||| | |||||| Sbjct 13004978 GCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCGCGGAGTATTCAACGATTTCC 13005037 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || ||||||||| | ||| ||| || | |||| |||||| || |||||| Sbjct 13005038 GTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAC 13005097 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 || ||||| |||||||||| || | ||||||||| || | || | ||||| | Sbjct 13005098 GCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGATGGCAAAC 13005157 Query 110467 CATA--CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGT 110524 || | || | || || ||| ||| || |||| |||| |||||| || | Sbjct 13005158 CACAGGGATTG--AGCCTTAACCGTTCGGTTGGCACGACCCTCCTGCTCGTATTTCTCAT 13005215 Query 110525 ACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGA 110584 ||| | || ||||| | || ||||||| || || |||| ||| || | Sbjct 13005216 ACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTGTGGGGGCACA 13005275 Query 110585 AGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCG 110644 ||| ||||||| ||| |||| || | |||||||| || || || ||||||| | Sbjct 13005276 TGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGG 13005335 Query 110645 CCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAA 110704 | | || || || ||| ||| |||||| | || ||| || |||| | Sbjct 13005336 CGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTGTTTTTCTTCAGTTCCAGGA 13005395 Query 110705 AGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---AC 110761 | || | || |||||||||||| ||||| || || | || | || || ||| | Sbjct 13005396 ACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGC 13005455 Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821 || |||| | ||||| || || ||||||||||| ||||| |||| | | Sbjct 13005456 CGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAGACCCTCAGCATGGGAACCAACC 13005515 Query 110822 CATCGGATTGACCATTTGTACCCCTAAT 110849 ||| ||| || ||||| || | ||| Sbjct 13005516 CATTGGACGTTCCGTTTGTGCCACAAAT 13005543 >seq104 Length=21139217 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/96 (80%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| ||| | Sbjct 13566160 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 13566101 Query 136775 TTGGGAACAGCTTTTAGATATATTTTTTGTATGTAT 136810 | || | | ||||| |||||||| ||| | ||| Sbjct 13566100 TGGGCCATAACTTTT--TTATATTTTGTGTTTTTAT 13566067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588916196849400