Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5 120 2e-22 seq1 120 2e-22 seq119 113 3e-20 seq67 107 1e-18 seq61 107 1e-18 >seq5 Length=900 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 374 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 315 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 314 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 255 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | ||| |||| Sbjct 254 ATCTTAGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGG 200 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||||||||| ||||||||||| Sbjct 199 TCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 166 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 830 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 771 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 770 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 711 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | ||| |||| Sbjct 710 ATCTTAGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGG 656 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||||||||| ||||||||||| Sbjct 655 TCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 622 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 602 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 543 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 542 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 483 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | ||| |||| Sbjct 482 ATCTTAGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGG 428 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||||||||| ||||||||||| Sbjct 427 TCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 394 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 146 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 87 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 86 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 31 >seq1 Length=21770863 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 2175870 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 2175929 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 2175930 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 2175989 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | ||| |||| Sbjct 2175990 ATCTTAGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGG 2176044 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||||||||| ||||||||||| Sbjct 2176045 TCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 2176078 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 2175642 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 2175701 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 2175702 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 2175761 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | ||| |||| Sbjct 2175762 ATCTTAGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGG 2175816 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||||||||| ||||||||||| Sbjct 2175817 TCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 2175850 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| || || ||||| || ||| | ||| | || ||| Sbjct 2176098 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGTCCGTCCTCC 2176157 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 2176158 AACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 2176217 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | || |||| Sbjct 2176218 ATCTTAGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAAGTGATGG 2176272 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || ||||| |||||||| || || |||||||| Sbjct 2176273 TCTTGCCAGTGAGGGTCTTCACGAAAATTTGCATATT 2176309 >seq119 Length=24197627 Score = 113 bits (124), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| ||||| ||||| | ||| |||| || Sbjct 4458912 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTC 4458971 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||| ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 4458972 GAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTG 4459031 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| || || || || || | || | |||||| || | ||| ||||| Sbjct 4459032 GATCTTAGCCTTCAC--ATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTC 4459089 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | ||||||||| |||||||||||| Sbjct 4459090 TTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 4459122 Score = 113 bits (124), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| ||||| || ||| | ||| |||| || Sbjct 4459575 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTC 4459634 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| || || ||||| || || || || ||||| ||| | || | |||||||| || Sbjct 4459635 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCTTG 4459694 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || || | || | |||||| || | ||| ||||| Sbjct 4459695 AATCTTAGCCTTCAC--ATTCTCAATGGTGTCCGACGGCTCAACTTCCAGGGTGATGGTC 4459752 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||||||||| |||||||||||| Sbjct 4459753 TTTCCGGTCAGAGTCTTCACGAAGATCTGCATA 4459785 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| || || || ||| | ||| | || || Sbjct 4459803 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 4459862 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| || || ||||| || || || || ||||| ||| | || | |||||||| || Sbjct 4459863 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTG 4459922 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || || | || | |||||| || | || ||||| Sbjct 4459923 AATCTTGGCCTTCAC--ATTCTCAATGGTGTCCGACGGCTCAACCTCCAAAGTGATGGTC 4459980 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||||||||| |||||||||||| Sbjct 4459981 TTTCCGGTCAGAGTCTTCACGAAGATCTGCATA 4460013 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| ||||| ||||| | ||| |||| || Sbjct 4461634 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTC 4461693 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || || || ||||| ||| | || | |||||||| || Sbjct 4461694 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTG 4461753 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || || | || | ||| || || | || ||||| Sbjct 4461754 AATCTTGGCCTTCAC--ATTCTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTC 4461811 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || | |||||||||||||||||||| || Sbjct 4461812 TTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 4461846 >seq67 Length=2158 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||||||||| || ||| | || |||| ||| Sbjct 1149 ACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 1090 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | || || ||||| | Sbjct 1089 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 1030 Query 34893 ATCTTCTGTTTGACGGATGCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | || | ||| || || || | || ||||| || Sbjct 1029 ATCTTGGCTTTGACATTTTCGATAGTATCCGACGG-TTCGACCTCAAGAGTGATGGTCTT 971 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| ||||| || ||||||||||| || Sbjct 970 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 938 >seq61 Length=22324452 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||||||||| || ||| | || |||| ||| Sbjct 13090682 ACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 13090623 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | || || ||||| | Sbjct 13090622 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 13090563 Query 34893 ATCTTCTGTTTGACGGATGCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | || | ||| || || || | || ||||| || Sbjct 13090562 ATCTTGGCTTTGACATTTTCGATAGTATCCGACGG-TTCGACCTCAAGAGTGATGGTCTT 13090504 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| ||||| || ||||||||||| || Sbjct 13090503 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 13090471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324601461577944