Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq433 100 2e-15 seq119 100 2e-15 seq104 89.7 4e-12 >seq433 Length=1799 Score = 100 bits (110), Expect = 2e-15 Identities = 186/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 368794 GTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTT 368853 ||||| || |||||||| ||||||||||| ||||| | || ||| |||| || ||| Sbjct 199 GTTTTTGACTGCTGGTTCGAATCAGGTTCAATGCCGTTTGCACAACAGCATTTCCCTTTT 258 Query 368854 GATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCA 368913 || |||| |||| ||||| ||| || ||| |||||| ||| || |||| Sbjct 259 GAAAACGAAAAAGACTTT----ATG--AACAATTTCCCGGCTGACTTTATAGCAGAGGGC 312 Query 368914 ATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGAT 368973 || ||||| || || || ||||| || || || | || |||| ||||| | || | Sbjct 313 ATCGATCAGACCCGCGGCTGGTTCTACACGCTCCTTGTGATATCGACAGCGCTGTTTAAC 372 Query 368974 AAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGGTCAAAAG 369033 || | ||||||| || | || | || ||| |||| || |||||||||| ||| Sbjct 373 AAGGCACCTTTTAAGAACCTCATTGCAAGTGGGCTTGTCTTGGCTGCTGATGGTCAGAAG 432 Query 369034 ATGTCAAAAAGTAAGGGTAATTATTCCGATCC 369065 ||||| || | ||| || || ||||||| Sbjct 433 ATGTCGAAGCGGAAGAAGAACTACCCCGATCC 464 >seq119 Length=24197627 Score = 100 bits (110), Expect = 2e-15 Identities = 186/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 368794 GTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTT 368853 ||||| || |||||||| ||||||||||| ||||| | || ||| |||| || ||| Sbjct 22678502 GTTTTTGACTGCTGGTTCGAATCAGGTTCAATGCCGTTTGCACAACAGCATTTCCCTTTT 22678561 Query 368854 GATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCA 368913 || |||| |||| ||||| ||| || ||| |||||| ||| || |||| Sbjct 22678562 GAAAACGAAAAAGACTTT----ATG--AACAATTTCCCGGCTGACTTTATAGCAGAGGGC 22678615 Query 368914 ATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGAT 368973 || ||||| || || || ||||| || || || | || |||| ||||| | || | Sbjct 22678616 ATCGATCAGACCCGCGGCTGGTTCTACACGCTCCTTGTGATATCGACAGCGCTGTTTAAC 22678675 Query 368974 AAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGGTCAAAAG 369033 || | ||||||| || | || | || ||| |||| || |||||||||| ||| Sbjct 22678676 AAGGCACCTTTTAAGAACCTCATTGCAAGTGGGCTTGTCTTGGCTGCTGATGGTCAGAAG 22678735 Query 369034 ATGTCAAAAAGTAAGGGTAATTATTCCGATCC 369065 ||||| || | ||| || || ||||||| Sbjct 22678736 ATGTCGAAGCGGAAGAAGAACTACCCCGATCC 22678767 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | |||||||| ||| | ||| || ||||| |||| || || | Sbjct 4459567 AGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGG--ATGTTGTAGTCAGACAGGGTGC 4459624 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| ||||| || ||||| || || || | |||||||| || || ||||| | Sbjct 4459625 GTCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCT 4459684 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 | ||||||||||| || || || |||||| || || | | | ||| || | Sbjct 4459685 CCTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGACGGCTCAACTTCCAGGG 4459744 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | || || || || ||||| || ||||| || |||||| Sbjct 4459745 TGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATA 4459785 >seq104 Length=21139217 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || || ||||| |||||||| || || || |||||||| | ||| Sbjct 10079389 ACCGTGCCCGCCTACTTCAACGACTCCCAACGTCAGGCCACCAAGGATGCTGGTCAGATT 10079330 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || |||||||| || || | || || || || ||||||||||| || || |||||| Sbjct 10079329 GCCGGTCTTAATGTGCTGCGCGTGATTAACGAGCCCACTGCTGCTGCTCTGGCCTATGGA 10079270 Query 550529 CTTGATAAA 550537 | || ||| Sbjct 10079269 ATGGACAAA 10079261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028866419125270