Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq61 273 2e-68 >seq61 Length=22324452 Score = 273 bits (302), Expect = 2e-68 Identities = 445/636 (70%), Gaps = 10/636 (2%) Strand=Plus/Plus Query 29759 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGAT 29818 |||| |||||||||||| || | || ||||| ||||||||| || || || | Sbjct 2961973 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGCTGCTCCTTCAGCGGCTCGACATGGT 2962032 Query 29819 CCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29878 |||||||||||| | ||| |||| |||||||||||| || ||||| | || || || | Sbjct 2962033 TCAGGTAGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGACCCGTCA 2962092 Query 29879 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 29938 | || || ||||||| ||||| || | ||| ||||||||| || || || || || | Sbjct 2962093 CATGGGCGATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAATGGCACGCCCAGGC 2962152 Query 29939 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGC-TC------ACG 29991 |||| || | ||||||||||||||||||||| ||||| ||| ||| || ||| Sbjct 2962153 CCATATCGGCGCTCCTCTGGTAGAGCTGACACGACAGCTCACCG-CGCGTCTGGGAGACG 2962211 Query 29992 TAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTC 30051 |||||||| || | ||| |||||||| || ||||| | || || ||| Sbjct 2962212 TAAAACTGCGCCAGGCAGTGACACGGAGGCAGGGCCATCTTCGGGATATCCAGCGGATTC 2962271 Query 30052 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 30111 || || ||| ||||||||||| ||| ||||| ||| ||||| ||| | | | Sbjct 2962272 CAAGCCGACATGATGATGCGCCGATCTGAGGGGTTATTCTTGATGGTGTCGATCACCTGG 2962331 Query 30112 TGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCC 30170 |||||||||| | ||| | || |||||| | | || || | |||||| || || Sbjct 2962332 CGCAGCTGATCGATTCCCTTGCCGCTGTAGTCGTCGTCGCAGGT-GGCGTACTCCGCCCC 2962390 Query 30171 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30230 |||||||| ||||||||| ||||||||||| ||||| || || || | | | | ||| Sbjct 2962391 GAAATGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACTGCGCGTTCCGTGAA 2962450 Query 30231 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30290 ||| |||||||| ||| ||||||| | ||| |||||||||| | || |||| | Sbjct 2962451 CCCCAGCTTGTCCAGAAACTCTCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTCGC 2962510 Query 30291 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30350 ||| |||| || || || |||||||||||||||||||| | || || Sbjct 2962511 CTGCAGCAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACAGC 2962570 Query 30351 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 | ||||||| |||||| || || || ||||| Sbjct 2962571 GCGGAAGAAGACCCGCTTGGTGGTCAGCAGTGGAAA 2962606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408577147240679