Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq119 114 1e-20 seq61 113 4e-20 seq5 82.4 6e-11 seq1 82.4 6e-11 >seq119 Length=24197627 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||| || || || || || ||||| || | | || | | Sbjct 4459569 ACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCC 4459628 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| |||||| || || || |||| |||||| ||||| || || || || || || Sbjct 4459629 ATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTT 4459688 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| || || ||| | || | ||||| |||| || ||||| || |||| Sbjct 4459689 ATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGACGGCTCAACTTCCAGGGTGAT 4459748 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| | ||| || || || |||||||| Sbjct 4459749 GGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 4459784 >seq61 Length=22324452 Score = 113 bits (124), Expect = 4e-20 Identities = 178/255 (70%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 13645 ATCTATATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGAT 13704 || || || |||||| ||||| || || | | | ||||||| || | || || | || Sbjct 16381081 ATTTACATCGAATTTGCGTTTGCATCCCTGATAGTTCATGTACCGAACCTTGCCGAAAAT 16381022 Query 13705 TGGTCGCTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATA 13764 | |||||| |||| | ||| || |||| |||||||||||||| || |||| Sbjct 16381021 AGCCCGCTCCTTCCAACCCATATCATGGACGCCGCCAATTGACCACATGCAGCCCACATA 16380962 Query 13765 ACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAA 13824 |||||||||||||||||||||| ||||||||||||||| | || |||| || Sbjct 16380961 GCCGTTGGGATCGCGTCCATCCAGACTGTATTTGTCGTTCAGCAGGATCGCGTACTCCAA 16380902 Query 13825 AGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATA 13884 ||| | || | || |||||| | || ||||| ||||| || || | || | | Sbjct 16380901 CGCCTCCTCTGGGGTTGCAGTCCATTCCAGAATCTTTTTGGCCCAGTACATCCGCAAAAA 16380842 Query 13885 TCCGTGCATTTTGCC 13899 ||||||||||| || Sbjct 16380841 GCCGTGCATTTTTCC 16380827 >seq5 Length=900 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| |||| | || | | || ||| Sbjct 374 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 315 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || || || || || || || || Sbjct 314 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 255 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || || | |||| || ||| Sbjct 254 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 195 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | ||| || || || ||||||||| Sbjct 194 CCGGTCAGAGTCTTCACGAAGATCTGCATG 165 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| |||| | || | | || ||| Sbjct 830 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 771 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || || || || || || || || Sbjct 770 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 711 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || || | |||| || ||| Sbjct 710 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 651 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | ||| || || || ||||||||| Sbjct 650 CCGGTCAGAGTCTTCACGAAGATCTGCATG 621 >seq1 Length=21770863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| |||| | || | | || ||| Sbjct 2175870 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 2175929 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || || || || || || || || Sbjct 2175930 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 2175989 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || || | |||| || ||| Sbjct 2175990 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 2176049 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | ||| || || || ||||||||| Sbjct 2176050 CCGGTCAGAGTCTTCACGAAGATCTGCATG 2176079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396239168809911