Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq104 123 3e-23 >seq104 Length=21139217 Score = 123 bits (136), Expect = 3e-23 Identities = 192/271 (71%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 ||||||||| ||| | ||||| || || || || || ||| | ||| || ||| || Sbjct 19765271 CAGATCCTCATCGGTGAAGCCTGTTCCAATTTTGCATATGCTCTGATACTCCTCGTTCTC 19765212 Query 197082 GGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTT 197141 | | || || || || | |||| | || |||||||| |||| | ||| || || Sbjct 19765211 AGTGTCATAGCAAGCAAGCAGGAAACCTCCATAGGTTCCAGTTCGCCGGCCCTTGCCTTT 19765152 Query 197142 GAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCAT--GTAATCTTTC 197199 | |||| || || ||||| |||||||| | ||||| ||| || || ||| || ||| Sbjct 19765151 GTAGCCACCAATGACCACTAGATCCAGTGAGTCGCCCACA--TTGGATAGGTAGTCCTTC 19765094 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 |||| ||||||||| | | |||| |||||||||||| ||||| || | | |||| Sbjct 19765093 TTCAATTTGAGCCAATTCCGGGATCGCTTGGCAATCTCATAGGTAGCCTCCTCATCCAAA 19765034 Query 197260 GTCTTGATCATCAATCCCTCGCAATCTTCCT 197290 ||||| | ||| | |||||||||| ||||| Sbjct 19765033 GTCTTCACCATGAGGCCCTCGCAAT-TTCCT 19765004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676660886568240