Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq61 260 3e-64 seq104 251 1e-61 >seq61 Length=22324452 Score = 260 bits (288), Expect = 3e-64 Identities = 1208/1887 (64%), Gaps = 95/1887 (5%) Strand=Plus/Plus Query 212551 TCACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCT 212610 |||| || ||||| | | || ||||| | ||| ||||| ||||||||||| ||||| | Sbjct 13004070 TCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCCGGTTT 13004129 Query 212611 TTAGGCC--CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 | || || ||| || || || | ||| || | || ||||| || | || | Sbjct 13004130 TGAGACCAGCTTTCC--AGGAGTAGAAGTGTATGGAGGTCAGTTT--TCCG-----TAGT 13004180 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 ||| ||| || ||| ||| | ||| | ||||||||||| |||||||| | | Sbjct 13004181 TTGG-----CTC-TG--CCACATGAATGTTGAATGACTGACTCTGATCTATGAAGGCACC 13004232 Query 212729 CCTGTCAGCGGCCATGTCTATGAT--ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAG 212786 | || |||||||| | || | | | ||| ||| |||||||| |||||| || Sbjct 13004233 ACGATCGGCGGCCATTTTAATCGTGGACTTGACTG--AGATTTCCCACACCGTCTTGTAG 13004290 Query 212787 ATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTG-TG--TATG 212843 | || | | || |||| | | |||||| || | || |||| | || |||| Sbjct 13004291 AGATCGCGAACCTTCTGGGGGATGGCCTCGATGTTTTGGATTGAGCCCCGGCTGGATATG 13004350 Query 212844 GTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCC--CTGGTCTCCAGGCACTTGACCA 212901 || | | | |||||| |||| ||| | | || || | | ||| | || Sbjct 13004351 ATCTGGTTCTT---CATGTCGTCGTCCCACAAGTCCAGCTCGGTT--AGGTCGCGCAGCA 13004405 Query 212902 GGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAG 212961 ||| ||||||| | ||| || || || || || || | ||| ||| | ||| | | Sbjct 13004406 AATGATGGTTGACCACCTGAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGG 13004465 Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021 | |||||||||| | || ||||| |||| |||||| || ||| || |||||||| | Sbjct 13004466 TATAGGGCTCGAAGGATTCATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCG 13004525 Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCT-CTGC 213079 |||| ||||| || ||||| || ||||||| |||| | | || || | |||| Sbjct 13004526 GAGCAACCAGCAGGGAGTTCCGGACGCCGTGCTGCTTGATG-GACTCCTTCAGTTTCTGC 13004584 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT 213139 | ||||||| | | || ||| |||| |||||||| ||||||| || Sbjct 13004585 C-AGTCCCAGAGGTTCGTTGGGACCTTGTCC---------CACATGTCGTACTGCAAAAT 13004634 Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 || |||||||| |||||||||| ||| | ||| || || | ||| |||||| || Sbjct 13004635 TCCCTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCCTCAGCCTGGGCCAGTTC 13004694 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGA------- 213252 ||| || | || ||| | ||||| |||||||| || |||| | || | Sbjct 13004695 ACAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAAAATCTGCTGATTCAACAGACC 13004754 Query 213253 -GCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 ||||||| | ||| | | | ||| ||| |||| | | | | ||||| | Sbjct 13004755 GGCTTCTTCAC-TCT-----CAT-ATGGGAATCG-CATGAGGATCAGCGCGTCAGCGAAT 13004806 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAG 213371 ||||| || || ||||| | ||| | ||| |||| || ||||| ||| || | Sbjct 13004807 CCCTGAACACCAATGCCAACGGGACGGTGCCTCAAATTGGACTTCTTTGCCTCTGGCAGG 13004866 Query 213372 GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGG 213431 || ||| ||||| || || |||||||| || || || | | |||||||| | Sbjct 13004867 GGATAATAGTTGATATCAATAATCTTGTTAAGATTTTTTGTAACTATCTTGGTGACTTCC 13004926 Query 213432 GCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATG 213491 || | || | || | |||| | ||| || |||||| ||||||||| Sbjct 13004927 TTTAGCTTCTTGAAATC--ATACGTCTTCTCCGGTGTG-ACAAACATGTTGAGGGCGATG 13004983 Query 213492 CTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCAC 213551 || |||||||| || || | ||| | | | | ||| || | ||| || |||||| Sbjct 13004984 GATGCAAGGTTGCAGACTGCTATCTCATCCGGCGCGGAGTATTCAACGATTTCCGTGCAC 13005043 Query 213552 AGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCC 213611 | ||||||||| ||||||||| | ||||| || || ||| |||| | ||| Sbjct 13005044 AAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCACGCGTCC 13005103 Query 213612 TTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGA 213669 ||| |||||||||| || || || || | || | | | | || ||| ||| | Sbjct 13005104 TTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGAT--GGCAAACCACA 13005161 Query 213670 GGTACCTGGCCTTGACCACCCGCCTGACAG----CTCCGGGCGTAGCCTCGTACTGTTCG 213725 || | ||||| ||| || || || |||| | |||||| | || Sbjct 13005162 GGGATTGAGCCTTAACCGTTCGGTTGGCACGACCCTCCTG-------CTCGTATTTCTCA 13005214 Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACAC 213785 || |||| | |||||| | |||||| || | || || || || ||| ||| Sbjct 13005215 TACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTGTGGGGGCAC 13005274 Query 213786 ATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGC 213845 ||||| ||| || || | | || | | |||||| || || || | |||||| Sbjct 13005275 ATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGG 13005334 Query 213846 GCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGA 213905 ||| || || || | || | |||| ||| |||| |||||| ||| || || Sbjct 13005335 GCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTGTTTTTCTTCAGTTCCAGG 13005394 Query 213906 AAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG 213965 || ||||||| |||| |||||| || |||| ||| ||||||||||| || || | |||| Sbjct 13005395 AACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCAAAGGCACCGGGACGCTTG 13005454 Query 213966 CCG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGC 214022 ||| ||||| ||||| | ||||| ||||||||| | ||| | ||| |||| | Sbjct 13005455 CCGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAGACCCTCAGCATGGGAACCAAC 13005514 Query 214023 CCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATG 214082 || |||||| |||||| || || || | | ||| || | | | || | Sbjct 13005515 CCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTTGCACGAATGCAATGCACG 13005574 Query 214083 GAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATG 214142 ||| || |||||||| || ||||||||||||| ||||| || ||||| || | Sbjct 13005575 TTGAGGCCGATGCCACCAGCAGACTTGGAGATCATAGCGCACTGCTCCACAGACTTGAAT 13005634 Query 214143 ATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG 214202 ||||| | ||| ||| | || | | |||||| ||| || ||| ||||| || | | Sbjct 13005635 ATGCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAACACGACGACAGCTGCGGACGG 13005694 Query 214203 GACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTG---TTAGAGAGG 214259 | | ||| | || |||||||| ||||| | | || | | | |||||| Sbjct 13005695 TTTGTGGCAGCGGCAAACAGCGTGGGCGATGCATG---CGTGAAGTAGCGCTCCGAGAGG 13005751 Query 214260 AGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CT 214318 || ||||||| |||| | | | ||||| | ||||| | || ||| | Sbjct 13005752 AGATTGTAGGTTTCCACGGCCGCATCAATGTCCTCTCCATGGATTCCGATCGC-CACGCG 13005810 Query 214319 CATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTT--GGGGCCCTTGAGCAGGTAGGAG 214376 ||||||||||||||| || || || | | |||| | | ||||||||| |||||| Sbjct 13005811 CATCAGCATGTGCTGTGG--TCGCTCGGCGATCTTTCCGTTTCTCTTGAGCAGATAGGAG 13005868 Query 214377 CGCTCCAGAGTCTTGAACCCAAAGTAG 214403 |||||||| ||||| || ||||| ||| Sbjct 13005869 CGCTCCAGGGTCTTAAAGCCAAAATAG 13005895 >seq104 Length=21139217 Score = 251 bits (278), Expect = 1e-61 Identities = 557/826 (67%), Gaps = 17/826 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||| ||||| ||||| || |||| ||| || |||| Sbjct 9083979 CTGGTACTCTCCCACCTTTTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTC 9083920 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||||||| ||||| || | | | ||||| || | |||| Sbjct 9083919 CATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAACTCCACAAGCAA 9083860 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 ||||||| ||| |||| ||||| | ||||| ||| |||||||| || | Sbjct 9083859 ACGATCCGCCACGAACTCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATT 9083800 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || |||| || | ||||| || |||| ||| ||| ||| || || | | |||| Sbjct 9083799 AACAGGCAGGGCATCGGTGAGGAATTCCTGCTCAATCGCCACTGCGTCGCGGATGATCTC 9083740 Query 48079 CTTAACGCGGGACTCTGAG---GGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA-G 48133 | | ||| ||| | | || | | ||| | ||||||| | | | || ||| | Sbjct 9083739 GATGATGCG---CTC-GCGCTTGGGTCGCTGCACCAGGTGCTGGA---ACATCA-GCACG 9083688 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||||||||| ||||| || ||| ||| ||||||||||| || ||| Sbjct 9083687 GCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCA 9083628 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || || ||||||||||| | ||||| ||| ||| |||||| Sbjct 9083627 GGCATAAGACCGCGCTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCGCTGAAAAAGATG 9083568 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 |||||||| || || || ||| ||| | ||| || ||| || ||| || ||| Sbjct 9083567 CCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCAAAATTGGCCGACTTAGAGGAAATC 9083508 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 |||||||| |||||||||||||| ||| | |||||||| || || || ||| Sbjct 9083507 CAGGAAAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCAATAGCGTTGAAC 9083448 Query 48374 AGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 || | || | | | |||| ||| | || || || |||| |||||||| Sbjct 9083447 AGGTACT--CTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCT 9083390 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | |||||||| ||||| || || ||||| || ||||||||| | ||||| | || Sbjct 9083389 CCGAGTGCACGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAGCGTGCCTCTGTGATCT 9083330 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 |||| || ||| | |||| ||||||||| || || || ||||| || || || | Sbjct 9083329 GCACCTCCTGACTGAAGCGTTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCGGCGA 9083270 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 ||||||| || || || | |||||||||||||| || | || | |||| | Sbjct 9083269 AGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAG 9083210 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| ||| || ||||| || || || |||||||| || || Sbjct 9083209 TAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAGGC 9083164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931438214488320