Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq61 149 1e-30 seq104 138 2e-27 >seq61 Length=22324452 Score = 149 bits (164), Expect = 1e-30 Identities = 528/818 (65%), Gaps = 19/818 (2%) Strand=Plus/Plus Query 221690 ACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA 221749 ||||| ||| ||||| | | || ||||| || || || | ||| ||| || Sbjct 13004963 ACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCGCGGAG 13005022 Query 221750 TACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTA 221809 || | | ||| || || || | |||||||||||||||||| || | | | ||||| Sbjct 13005023 TATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGATTG 13005082 Query 221810 GACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCC 221869 ||| | ||| ||||||||| ||||||| | ||| ||||| |||| || ||| Sbjct 13005083 CTCTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCC 13005142 Query 221870 ACCAGAATCTTGTC---CCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCG 221926 | ||| || | ||| || | || | ||||| | ||| | |||||| Sbjct 13005143 TC---AATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCACGACCCTCC 13005199 Query 221927 GTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCT 221986 || | | | | ||| ||| | || || | || || || | || | ||||| Sbjct 13005200 TGCTCGTATTTCTC---ATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCA 13005256 Query 221987 GGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAG 222046 || || || ||| ||||| || ||| | ||| | | || | | ||||||| Sbjct 13005257 GGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAAG 13005316 Query 222047 AGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTG 222106 || || || |||||||| || | ||||||||| | || || | ||| ||| ||| || Sbjct 13005317 AGATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTG 13005376 Query 222107 TTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCC 222166 |||||| |||| |||| |||||||| | || | |||||| || ||||| || | ||| Sbjct 13005377 TTTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCA 13005436 Query 222167 AGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATG 222226 | || ||||| |||||| ||| ||||||||||| | | ||| | |||||||| Sbjct 13005437 AAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAGACC 13005496 Query 222227 CGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCG 222286 | || | || |||| || ||||| ||||| ||||| |||| | | || Sbjct 13005497 CTCAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTT 13005556 Query 222287 GCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCA- 222345 || | | | | | | |||||| ||||| || || |||||||| ||||| Sbjct 13005557 GCACGAATGCAATGCACGTTGAGGCCGATGCCACCAGCAGACTTGGAGATCATAGCGCAC 13005616 Query 222346 -GCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAAC 222404 |||| ||| | | || |||||||| || ||||| | | | | ||||||| |||| Sbjct 13005617 TGCTCCACAGACT-TGAAT-ATGCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAAC 13005674 Query 222405 AAGACGACATCT---GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTG 222461 | ||||||| || || || |||| | ||| |||||||||||| || || | Sbjct 13005675 ACGACGACAGCTGCGGACGGTTTGTGGCA---GCGGCAAACAGCGTGGGCGATGCATGCG 13005731 Query 222462 TAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACG 222499 | ||||||| | || | |||| ||| || || ||| Sbjct 13005732 TGAAGTAGCGCTCCGAGAGGAGATTGTAGGTTTCCACG 13005769 >seq104 Length=21139217 Score = 138 bits (152), Expect = 2e-27 Identities = 348/523 (67%), Gaps = 12/523 (2%) Strand=Plus/Plus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||||| ||| ||| | ||| || |||||||| | | |||| || || | Sbjct 9083172 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGCCTGAAGGA 9083231 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 ||||||| ||||| || | ||||| |||| ||||| || ||||| ||||| || || Sbjct 9083232 CGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCATCGT 9083291 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 |||||||||||| || | |||| ||| |||||| | ||||| || || Sbjct 9083292 AAACGAGAATCTGGTGGAACGCTTCAGTCAGGAGGTGCAGATCACAGAGGCACGCTGCTT 9083351 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| || ||||| ||||| || || |||||||| ||| |||| || | ||||| Sbjct 9083352 CTACGGCTTTCAGATTGCCATGGAGAACGTGCACTCGGAGATGTA---CAGTGTGCTGAT 9083408 Query 25752 -GACGTACATTACAGACG----TCGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805 ||| || ||||| || ||| | || |||| ||||| || || || Sbjct 9083409 CGAC--AC-TTACATCCGGGATCCGCACCAGCGAGAGTACCTGTTCAACGCTATTGAAAC 9083465 Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC 25865 || || | ||| | ||||| |||||| | ||||| | || || Sbjct 9083466 GATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTTTCCTGGATTTCCTCTAAGTCGGC 9083525 Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 | ||||| ||||| | | |||||||| || ||||||||||||||||||||||| Sbjct 9083526 CAATTTTGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTTTTCAGCGGCAG 9083585 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAA 25985 || || | || |||||||| ||| || || ||||| || ||| ||| ||||| Sbjct 9083586 CTTCGCCTCTATTTTCTGGCTTAAGAAGCGCGGTCTTATGCCTGGACTGACCTTCTCCAA 9083645 Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCC 26028 |||||| ||| | |||||||| | ||| | || |||||| Sbjct 9083646 CGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCC 9083688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928750487421120