Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq473 149 4e-30 seq67 120 2e-21 seq61 120 2e-21 seq119 102 5e-16 >seq473 Length=28832112 Score = 149 bits (164), Expect = 4e-30 Identities = 367/548 (67%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 15364109 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCATGGCAAGGTCG 15364050 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 15364049 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 15363990 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || ||||| || || || | || | || || || | || | Sbjct 15363989 CGGAGCGTCTGATCGGAGACGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 15363930 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || || || || | ||||||||||| || || ||||| || |||| || || || | Sbjct 15363929 TCTTCGACGCCAAGCGTTTGATTGGTCGCAAGTTCGATGACGCCGCTGTGCAGTCGGACA 15363870 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | | | ||| || || | || || | | | Sbjct 15363869 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGCCGATGGCAAGCCCAAGATTGAGGTGACCT 15363810 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 15363809 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCGATGGTGCTCACCAA 15363752 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | |||| ||| ||||| || || | || || || || Sbjct 15363751 GATGAAGGAGACCGCCGAG-GCCTATC-TGGGCAAGACTGTGACCAACGCTGTCATCACC 15363694 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || ||||| ||||| || || || || || || | || || Sbjct 15363693 GTGCCGGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGACGCCGGCACCATCGCT 15363634 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| || || | ||||| || || || || ||||| || || ||||||| ||||| Sbjct 15363633 GGTCTGAACGTGCTGCGTATCATCAACGAGCCCACAGCCGCTGCTATTGCTTACGGTCTG 15363574 Query 474869 GATAAGAA 474876 || ||||| Sbjct 15363573 GACAAGAA 15363566 >seq67 Length=2158 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | | |||||| || ||||| ||||| || || ||||| || Sbjct 1119 TTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 1060 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| |||||||| Sbjct 1059 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCC 1000 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 999 GACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 944 >seq61 Length=22324452 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | | |||||| || ||||| ||||| || || ||||| || Sbjct 13090652 TTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 13090593 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| |||||||| Sbjct 13090592 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCC 13090533 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 13090532 GACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 13090477 >seq119 Length=24197627 Score = 102 bits (112), Expect = 5e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| || || || || ||||| || ||||| ||||||||||| |||||| Sbjct 4460454 TCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTG 4460513 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| || ||| ||||| || || | || | || ||| ||||| || Sbjct 4460514 TCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAA-CTTCCAGGGTGAT 4460572 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||| ||||| || || Sbjct 4460573 GGTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 4460605 Score = 98.7 bits (108), Expect = 6e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| || || || || ||||| || ||||| ||||||||||| |||||| Sbjct 4460682 TCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTG 4460741 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| || ||| ||||| || || | | | ||| ||||| || Sbjct 4460742 TCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACTTCCAGGGTGATG 4460801 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||| ||||| || || Sbjct 4460802 GTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 4460833 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| || || || | || || |||| ||||| Sbjct 4460019 ACGCAGACGGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 4460078 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || |||||||| || || || || ||||| || ||||| ||||||||||| Sbjct 4460079 GCGTCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 4460138 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| ||||| || ||| ||||| || || | || | || ||| | Sbjct 4460139 CTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAA-CTTCCA 4460197 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || ||||| | |||||| ||||| || || Sbjct 4460198 GGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTG 4460237 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| || || || || ||||| || ||||| ||||||||||| |||||| Sbjct 4459195 TCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTG 4459254 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| || ||| ||||| || || | | | ||| ||||| || Sbjct 4459255 TCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACTTCCAGGGTGATG 4459314 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| | |||||| ||||| || || Sbjct 4459315 GTCTTTCCGGTCAAAGTCTTCACGAAGATCTG 4459346 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| || || || || ||||| || ||||| ||||||||||| |||||| Sbjct 4460910 TCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTG 4460969 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| || ||| ||||| || || | | | ||| ||||| || Sbjct 4460970 TCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACTTCCAGGGTGATG 4461029 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| | |||||| ||||| || || Sbjct 4461030 GTCTTTCCGGTCAAAGTCTTCACGAAGATCTG 4461061 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| || || || || ||||| || ||||| || || ||||| ||||| Sbjct 4459629 ATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTT 4459688 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||||| || ||| ||||| || || | | | ||| ||||| || Sbjct 4459689 ATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGACGGCTCAACTTCCAGGGTGAT 4459748 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||| ||||| || || Sbjct 4459749 GGTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 4459781 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| || || || | || || |||| ||||| Sbjct 4461071 ACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 4461130 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||| || || || || ||||| || ||||| ||||||||||| Sbjct 4461131 GCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 4461190 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||| ||||| || ||| ||||| || || | | | ||| || Sbjct 4461191 CTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACTTCCAG 4461250 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| | |||||| ||||| || || Sbjct 4461251 GGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTG 4461289 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| || || || | || || |||| ||||| Sbjct 4461394 ACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 4461453 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||| || || || || ||||| || ||||| ||||||||||| Sbjct 4461454 GCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 4461513 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||| ||||| || ||| ||||| || || | | | ||| || Sbjct 4461514 CTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACTTCCAG 4461573 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| | |||||| ||||| || || Sbjct 4461574 GGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTG 4461612 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| ||||| | ||| || || || || || || || || ||||| || Sbjct 4458715 TTGTAATCAGAAAGAGTGCGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAGACGCTGC 4458774 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| ||||||||||| ||||||||||| ||||| || ||| ||||| || || Sbjct 4458775 TGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCT 4458834 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||| ||||| || || || ||||| | |||||| ||||| || || Sbjct 4458835 GAAGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTG 4458890 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| || || || | || || |||| ||||| Sbjct 4458900 ACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 4458959 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || || || || || || || ||||| || ||||| ||||||||||| Sbjct 4458960 GCGTCCATCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 4459019 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| ||||| || ||| ||||| || || | || | || ||| | Sbjct 4459020 CTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAA-CTTCCA 4459078 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || ||||| | |||||| ||||| || || Sbjct 4459079 GGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTG 4459118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267830765117204