Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq61 165 1e-35 >seq61 Length=22324452 Score = 165 bits (182), Expect = 1e-35 Identities = 885/1390 (64%), Gaps = 52/1390 (4%) Strand=Plus/Minus Query 75608 TACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGG 75666 ||| ||||||| ||||| | ||| || | |||||||| || | | || ||| || Sbjct 13005429 TACCTGGAACCTTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAA-AACACTGG 13005371 Query 75667 TGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCAT 75726 | |||||| ||| | |||||||||| |||||||||| || || || ||||| Sbjct 13005370 CAAGGAAGAGAATCGCGCCCGCGATCTCTTTTACGCCCTGTGGATACCCGATCTCTTCAT 13005311 Query 75727 GAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCT 75786 ||| || || |||| ||| | ||||| || | || || |||| || || || Sbjct 13005310 GAAACGCGTGGAGGCCAATGGCGATTGGTCGCTCATGTGCCCCCACAAATGCCCTGGCCT 13005251 Query 75787 CTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAG 75846 | || | | ||| || || || ||| || || || || || |||||||| | Sbjct 13005250 CCAAGATGTGTGGGGCGATGAATTCGAAAAGCTGTATGAGAAATACGAGCAGGAGGGTCG 13005191 Query 75847 AGCCAATGCGACTGTACCAGCCGCCGATG--TTTGGAAGGCTATTCTCAAATCACAGACG 75904 ||||| || || || | || | ||| || || | | | || | Sbjct 13005190 TGCCAACCGAACGGTTAAGGCT--CAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTG 13005133 Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| || || ||||| | |||||| || || |||| |||||| || || || Sbjct 13005132 GAAACTGGAAATCCGTACATGCTCTTCAAGGACGCGTGCAACAGGAAGAGCAATCAGCAG 13005073 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | || || |||||| || || | ||||||||||| | || ||| | | | Sbjct 13005072 AATGTTGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATACTCCGCGCCG 13005013 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||||| || || ||||| | ||||| |||||||| | || ||||| ||| Sbjct 13005012 GATGAGATAGCAGTCTGCAACCTTGCATCCATCGCCCTCAACATGTTTGTCACACCGGAG 13004953 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | || | ||||| | || || | ||| |||| ||||| ||||| |||||||| Sbjct 13004952 A---AGACGTATGATTTCAAGAAGCTAAAGGAAGTCACCAAGATAGTTACAAAAAATCTT 13004896 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCG 76203 ||| | ||||| | || | ||||||| | ||| || ||||| ||| || | Sbjct 13004895 AACAAGATTATTGATATCAACTATTATCCCCTGCCAGA-GGCAAAGAAGTCCAATTTGAG 13004837 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263 ||| | || |||| | |||||||| || |||| || | | || | || | Sbjct 13004836 GCACCGTCCCGTTGGCATTGGTGTTCAGGGATTCGCTGACGCGCTGATCCTCATGCGATT 13004777 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 | ||| ||| || |||||| | ||||| | || || |||||||| || | Sbjct 13004776 CCCATATGAGAGTGAAGAAGCCGGTCTGTTGAATCAGCAGATTTTCGAAACCATTTACTA 13004717 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 | || |||| || || |||||| |||| | || | ||| | || || || | || Sbjct 13004716 TGGCGCCTTGGAAGCCAGCTGTGAACTGGCCCAGGCTGAGGGTCCATACGAAACCTACGA 13004657 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAGGT-GAAACCAA 76440 ||| || | | | | || | | |||| || ||||||| ||||| ||| || Sbjct 13004656 GGGCAGCCCGGTGAGCAAGGGAATTTTGCAGTACGACATGTGGGACAAGGTCCCAACGAA 13004597 Query 76441 GCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 76500 || || |||||| | || ||||| ||||||| || | || | || ||| Sbjct 13004596 CCT---CTGGGACTGGCAGAAACTGAAGGAGTCCATCAAGCAGCACGGCGTCCGGAACTC 13004540 Query 76501 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 76560 || || | || || ||||| || || ||||| || || || |||| || ||||||| Sbjct 13004539 CCTGCTGGTTGCTCCGATGCCCACTGCTTCCACAGCTCAGATTATGGGCAACAATGAATC 13004480 Query 76561 CTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCAT 76620 ||| || || || || || ||||| ||| || || || | || || ||| | Sbjct 13004479 CTTCGAGCCCTATACCACGAACATATACACCAGGCGAGTTCTGTCCGGCGAATTTCAGGT 13004420 Query 76621 TGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAA 76680 |||||| | || | | ||||| | || | | | ||| | | || ||||| Sbjct 13004419 GGTCAACCATCATTTGCTGCGCGACCTAACCGAGCTGGACTTGTGGGACGACGACATGAA 13004360 Query 76681 GGATCTCATGGT-GAAAGCGGGTGGTTCCATTCAAAATATCTCAG--ATATCCCAGATGA 76737 | | | || | ||| || || || || ||||| ||| | || |||||| | Sbjct 13004359 GAACCAGATCATATCCAGCCGG-GGCTCAATCCAAAACATCGAGGCCATCCCCCAGAAGG 13004301 Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTC----ATTGACA 76793 | || | |||||||| || |||||||||||| | | | ||| ||| | | Sbjct 13004300 T-TCGCG-ATCTCTACAAGACGGTGTGGGAAATC----TCAGTCAAGTCCACGATTAAAA 13004247 Query 76794 TGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT-ATGAATCTATTCAT---G 76849 ||||||| ||||||||| |||||| ||||| |||| ||| || | | |||||| | Sbjct 13004246 TGGCCGCCGATCGTGGTGCCTTCATAGATCAGAGTC--AGTCATTCAAC-ATTCATGTGG 13004190 Query 76850 GAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTC 76909 | || | ||| | | || || | || || || | ||| | |||||| || ||| Sbjct 13004189 CAGAGCCAAACTACG-GAAAACTGACCTCCATACACTTCTACTCCTGGAAAGCTGGTCTC 13004131 Query 76910 AAAACCGGAATGTACTATCTCCGATCAAAG------GCGAAAGCCCGACCAATTCAGTTC 76963 |||||||||||||||||||| || ||||| ||||| ||| ||||||||| Sbjct 13004130 AAAACCGGAATGTACTATCTGCGCACAAAGCCAGCTGCGAATGCC------ATTCAGTTC 13004077 Query 76964 AGCCTTGAAC 76973 | || ||||| Sbjct 13004076 A-CCGTGAAC 13004068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596509025814240