Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 127 6e-24 seq473 98.7 3e-15 seq61 93.3 1e-13 >seq1 Length=21770863 Score = 127 bits (140), Expect = 6e-24 Identities = 178/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| ||| || ||| |||||||| ||| Sbjct 10703072 TCCATAGCCTTTATAAGACGACGCTGGATGTAACCGGTTTCAGCTGTCTTTACAGCAGTA 10703013 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||||||||| || ||||| | | ||| || || || Sbjct 10703012 TCGATAAGACCCTCACGACCACCCATGGCGTGGAAATAGAACTCAGAGGGAGTCAGGCCG 10702953 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | || |||| ||||||||||| | ||| || || ||||||| ||| || Sbjct 10702952 GCAAGATACGAATTCTCCACGAAACCACGGGACTCAGGACCGTAATCGTC---TTTGATA 10702896 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 ||||| || || || | || | ||||| ||||| ||||| || || ||||||||| Sbjct 10702895 AAGTGGGGAAGAGTGCGCTTGCGGAAACCGTAAGGGATTCGCTTACCCTCCACGTTCTGC 10702836 Query 302812 TGTCCCA 302818 || |||| Sbjct 10702835 TGACCCA 10702829 >seq473 Length=28832112 Score = 98.7 bits (108), Expect = 3e-15 Identities = 112/145 (77%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| || ||||| ||||| || |||||||| |||||| || || || Sbjct 16473916 ATTGTCATACGAGATGGGATAGCGTGGGGGTTAATGATGATATCGGGTGCCAAGCCCTC- 16473974 Query 251905 GCAG-TGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGT 251962 |||| |||||| |||||||| || | || || |||| |||||||||||||||| Sbjct 16473975 GCAGGTGAAGGCCATATCCTCTTGG-CGGTACTGGATTCCGCACGTTCCCTTTTGTCCGT 16474033 Query 251963 GACGAGAACTGAACTTATCACCAAT 251987 |||||||| ||||||||| ||||| Sbjct 16474034 GACGAGAAGCGAACTTATCGCCAAT 16474058 >seq61 Length=22324452 Score = 93.3 bits (102), Expect = 1e-13 Identities = 324/498 (65%), Gaps = 16/498 (3%) Strand=Plus/Plus Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464 ||| || || |||||||| ||||| || || || || ||||| ||||| | | ||| Sbjct 13004797 GTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGCCTCAAATTGGACTTCTTTGC 13004856 Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATA 155520 || || | ||| ||| | || | ||||||||| || || | |||| ||||| || Sbjct 13004857 CT-CTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTAAGATTTTTTGTAAC---TA 13004912 Query 155521 CCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC 155580 |||||| || || || ||| | ||| | || || ||| | |||||||| Sbjct 13004913 TCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGTCTTCTCCGGTGTGACAAACATGT 13004972 Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACA 155639 || | || || || || || || || || |||| | | || || |||||| || Sbjct 13004973 TGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCG-CGGAGTATTCAACG 13005031 Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 || || ||||| ||| | |||||||||||| | ||||| ||| || || ||| Sbjct 13005032 ATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTG 13005091 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || || || |||||| | || ||||| || |||| || |||| || || || | || Sbjct 13005092 TTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGATG 13005151 Query 155760 TTTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATAT 155816 | ||| ||| | || |||| || | |||| | || ||| ||| ||| Sbjct 13005152 GCAAACCACAGGGATTGAGCCTTAACCGTTCG---GTTGGCACGACCCTCCTGCTCGTAT 13005208 Query 155817 TTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCG 155876 ||| ||||||| || | | || || || | ||| || |||||||| || | | Sbjct 13005209 TTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTGTGG 13005268 Query 155877 GGGCAAAACAGCGACCAA 155894 ||||| | ||||||||| Sbjct 13005269 GGGCACATGAGCGACCAA 13005286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471664419203451