Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-33 seq119 82.4 6e-11 >seq1 Length=21770863 Score = 158 bits (174), Expect = 1e-33 Identities = 167/218 (77%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||| ||| | | | || || |||||||||||||| || || ||||| || || || || Sbjct 10071295 TTGTGATCAAACAGTGTCTGTGCGCCCAGCTCGCAACCAAAATACTTGGTTGGATAGGTG 10071354 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 ||||| ||||| | ||| | || | ||| | |||||| || | || |||||||||||| Sbjct 10071355 GCCGGGCGTCCGATGGCCCTAGCCACTTCCGCCATGTTAACCAGCACGGTCTTGATGCCG 10071414 Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 || ||||| || |||||||| || ||||| || ||||| |||||||||||||| || Sbjct 10071415 TTTCCCTTGCCCTCGACCTTTGCCTGCAGA--CGTGGCATCTTGTAGCGGTAGAAGATGT 10071472 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 ||| |||| ||||||| ||||| || || ||||| || Sbjct 10071473 CCGTCACACTGCGGTTTACGTTTACGGTGGCCATCTTG 10071510 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGT-AGCGTGCCGTGATA 34262 || ||||| |||| || || ||||| | || || | || | | ||| ||||| | Sbjct 10071005 GGAGGGTTCTTCACAATAAATGTGTTTACTTTGTG-GTTAACTTTGAGCAGACCGTGGAA 10071063 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 |||||||| ||||| ||| | || | | ||||| |||||||| | || | || Sbjct 10071064 GCCGCATGCCTTGCAAGACTGCGAAATGGTCTGGTTTTTGGCGGACACAGTTAGATTGGT 10071123 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 |||||| ||||| ||||| || || |||||||||||||| || |||||||| | || || Sbjct 10071124 CTCCGGATTGTCGCATTCGGGGCATAACACAAACTTGCGAATAAAACCATCCAACAAATC 10071183 Query 34383 CTGTAACTT 34391 || ||||| Sbjct 10071184 TTGCAACTT 10071192 >seq119 Length=24197627 Score = 82.4 bits (90), Expect = 6e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 || |||||||| |||||||||||||| || ||||||| || ||||||||| | ||| || Sbjct 11134075 GGTCTGCACGGATTCCACGTGCACGAGTTCGGCGACAACACCAACGGCTGCATGTCGTCC 11134016 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAAAGGCA 107289 || |||||||||||| || ||| | ||||| || |||| || | | | || Sbjct 11134015 GGACCGCACTTCAATCCC-TATGGCAAGGAGCACGGCGCTCCCGTCGATGACAACCGCCA 11133957 Query 107290 CGTCGGCGATCTGGGCAAC 107308 | | || ||| |||||||| Sbjct 11133956 CTTGGGGGATTTGGGCAAC 11133938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412800729068639