Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq104 140 5e-27 seq1 131 3e-24 seq107 123 4e-22 seq61 120 5e-21 seq5696 118 2e-20 seq119 113 7e-19 >seq104 Length=21139217 Score = 140 bits (154), Expect = 5e-27 Identities = 229/329 (70%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||||||| ||| | |||||| ||| || || ||||| || ||||||||| Sbjct 9083669 CCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCATAAGACCGCGCTTC 9083610 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || || | ||| ||||| ||||||||||||||| |||||||||||| Sbjct 9083609 TTAAGCCAGAAAATAGAGGCGAAGCTGCCGCTGAAAAAGATGCCCTCCACGGCGGCAAAG 9083550 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG--ATCCACTTCATCGCCC 794518 ||| || ||||| ||||| | |||| ||| | | ||||| | |||| Sbjct 9083549 GCGATGATGCGCTCCCCAAAATT-----GGCCGACTTAGAGGAAATCCAGGAAAGGGCCC 9083495 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | |||||||| | |||| | |||| ||| || || ||| || |||| || || Sbjct 9083494 AGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCAATAGCGTTGAACAGGTACTCTCGCT 9083435 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | ||| ||| || ||| |||||||| || | ||| |||| ||||| | ||| | Sbjct 9083434 GGTGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAGTGCACGTTCT 9083375 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | ||||| ||||| ||||| || |||||| Sbjct 9083374 CCATGGCAATCTGAAAGCCGTAGAAGCAG 9083346 Score = 123 bits (136), Expect = 4e-22 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||| || ||| |||||| || || ||| Sbjct 1308177 TGTACTTGGTGACAGCCTTGGTTCCCTCACTGACAGCATGCTTGGCCAACTCTCCCGGCA 1308118 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || || || ||||| || || || ||| || ||||||||| | Sbjct 1308117 GAAGCAGGCGAACAGCCGTTTGGATTTCTCGACTGGTGATGGTCGAGCGCTTGTTGTAGT 1308058 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||||| | ||||| |||| || || || ||||| ||||| Sbjct 1308057 GAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAAAATATCATTTACAAAGCTGTTCA 1307998 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || || ||||| ||| || || ||||||||||| ||||||| Sbjct 1307997 TGATGCTCATCGCCTTAGATGAAATGCCGGTGTCAGGATGGACCTGCTTGAGAACCTTGT 1307938 Query 1485710 AAA 1485712 ||| Sbjct 1307937 AAA 1307935 Score = 89.7 bits (98), Expect = 8e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || |||||||| || ||||| || | |||||| | ||| | |||||||| | Sbjct 8924444 GAGAAGCGCACGGATGACATCTCATCCTGGGACGCCGACTTCCTTAAAGTCGACCAGGGC 8924503 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || || |||||||||| || |||||||| ||||| || || ||||| | Sbjct 8924504 ACTCTGTTCGAACTGATCCTCGCGGCTAACTACCTGAACATCCAGGGTCTGCTCGACGTC 8924563 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| |||||||| | ||||||||||| | || | ||||| ||| | ||| Sbjct 8924564 ACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAAACACCGCAAGACATTCGCGACACC 8924623 Query 2035746 TT 2035747 || Sbjct 8924624 TT 8924625 Score = 87.8 bits (96), Expect = 3e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 ||| |||||||||||||| || || ||||| |||| |||||| | ||| ||||| Sbjct 9083958 CTCAAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTGAAGGGGTTCTT 9083899 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 || |||| |||| | || | | | |||||| || || || ||||| || || Sbjct 9083898 GGTGTTGTAGATCTTCCCAACGCCCAACTCCACAAGCAAACGATCCGCCACGAACTCTAT 9083839 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGAC 794104 ||||||| |||| ||| | ||||||||||| | || ||||| | ||| ||| Sbjct 9083838 GTACTGGGACATCAGGTCACAATTCATGCCGATTAAATTAACAGGCAGGGCATCGGTGAG 9083779 Query 794105 AAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 || || | ||| ||| | || || ||| |||||||| Sbjct 9083778 GAATTCCTGCTCAATCGCCACTGCGTCGCGGATGATCT 9083741 >seq1 Length=21770863 Score = 131 bits (144), Expect = 3e-24 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || |||||||| ||||||||| ||||||| || ||| | || || || | Sbjct 471888 GAGAAGCGCACGGACGACATTATCTCGTGGGATGCGGACTTCCTGAAAGTGGATCAGGGC 471947 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||| | || ||| | ||||| ||||||||||| || |||||||| |||||| || | Sbjct 471948 ACCTTGTTCGAGCTCATCCTGGCCGCCAACTATCTGGACATCAAAGGCCTCCTGGAGCTC 472007 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| ||||| ||| | |||||||||||| | |||||||| |||||||||||| Sbjct 472008 ACCTGCAAGACGGTGGCAAACATGATCAAGGGCAAGACTCCCGAGGAGATCCGCAAGACC 472067 Query 2035746 TTTAACATCAAG 2035757 || ||||| ||| Sbjct 472068 TTCAACATAAAG 472079 >seq107 Length=4505 Score = 123 bits (136), Expect = 4e-22 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||| || ||| |||||| || || ||| Sbjct 2114 TGTACTTGGTGACAGCCTTGGTTCCCTCACTGACAGCATGCTTGGCCAACTCTCCCGGCA 2055 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || || || ||||| || || || ||| || ||||||||| | Sbjct 2054 GAAGCAGGCGAACAGCCGTTTGGATTTCTCGACTGGTGATGGTCGAGCGCTTGTTGTAGT 1995 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||||| | ||||| |||| || || || ||||| ||||| Sbjct 1994 GAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAAAATATCATTTACAAAGCTGTTCA 1935 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || || ||||| ||| || || ||||||||||| ||||||| Sbjct 1934 TGATGCTCATCGCCTTAGATGAAATGCCGGTGTCAGGATGGACCTGCTTGAGAACCTTGT 1875 Query 1485710 AAA 1485712 ||| Sbjct 1874 AAA 1872 >seq61 Length=22324452 Score = 120 bits (132), Expect = 5e-21 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 2071819 GGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTC 2071878 ||||| | ||||||||| ||||| | | ||||||| ||| || || ||| || Sbjct 13005269 GGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATC 13005328 Query 2071879 CACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGG 2071938 |||||| |||||||||||||||| || || ||||| |||||||| ||| || ||||| Sbjct 13005329 CACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTGTTTTTCTTCAGT 13005388 Query 2071939 TCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 2071998 || || | || | || || | |||||| || |||||||| ||||||||| || Sbjct 13005389 TCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCAAAGGCACCGGGA 13005448 Query 2071999 CGCTTGCCGCCGCC 2072012 ||||||||||| || Sbjct 13005449 CGCTTGCCGCCTCC 13005462 Score = 100 bits (110), Expect = 5e-15 Identities = 178/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || ||||| |||||| | ||| ||||| | |||||||| || | || ||||| Sbjct 13005463 CTGATCCACATAACGCGCCACATTGTTGAAGACCCTCAGCATGGGAACCAACCCATTGGA 13005522 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||| ||||| | | ||| |||| || || | ||| || | ||| Sbjct 13005523 CGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTTGCACGAATGCAATGCACGTTGAGGCC 13005582 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| || || | ||||||||| | ||||||| | || | || | | |||||||| Sbjct 13005583 GATGCCACCAGCAGACTTGGAGATCATAGCGCACTGCTCCACAGACTTGAATATGCCCTC 13005642 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| |||||||| ||||| || ||| || |||||||| ||||| || ||| | Sbjct 13005643 GATGGAGTCGGCAGTCATGGTCAGCAGGAAACACGACGACAGCTGCGGACGGTTTGTGGC 13005702 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 || || |||||||||| Sbjct 13005703 AGCGGCAAACAGCGTGGGCG 13005722 >seq5696 Length=13378 Score = 118 bits (130), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||| | ||| |||||| || || ||| Sbjct 189 TGTACTTGGTGACAGCCTTGGTTCCCTCACTGACAGAATGCTTGGCCAACTCTCCCGGCA 248 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || || || ||||| || || || ||| || ||||||||| | Sbjct 249 GAAGCAGGCGAACAGCCGTTTGGATTTCTCGACTGGTGATGGTCGAGCGCTTGTTGTAGT 308 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||||| | ||||| |||| || || || ||||| ||||| Sbjct 309 GAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAAAATATCATTTACAAAGCTGTTCA 368 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || || ||||| ||| || || ||||||||||| ||||||| Sbjct 369 TGATGCTCATCGCCTTAGATGAAATGCCGGTGTCAGGATGGACCTGCTTGAGAACCTTGT 428 Query 1485710 AAA 1485712 ||| Sbjct 429 AAA 431 Score = 118 bits (130), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||| || ||| |||||| || || ||| Sbjct 5136 TGTACTTGGTGACAGCCTTGGTTCCCTCACTGACAGCATGCTTGGCCAACTCTCCCGGCA 5195 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || || || ||||| || || || ||| || ||||||||| | Sbjct 5196 GAAGCAGGCGAACAGCCGTTTGGATTTCTCGACTGGTGATGGTCGAGCGCTTGTTGTAGT 5255 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||||| | ||||| |||| || || || ||||| ||||| Sbjct 5256 GAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAAAATATCATTTACAAAGCTGTTCA 5315 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || || || || ||| || || ||||||||||| ||||||| Sbjct 5316 TGATGCTCATCGCCTTAGATGAAATTCCGGTGTCAGGATGGACCTGCTTGAGAACCTTGT 5375 Query 1485710 AAA 1485712 ||| Sbjct 5376 AAA 5378 >seq119 Length=24197627 Score = 113 bits (124), Expect = 7e-19 Identities = 346/524 (66%), Gaps = 16/524 (3%) Strand=Plus/Minus Query 2411460 GTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTT 2411519 |||||| ||||| |||||||| | ||||| || | || |||| ||||||||| Sbjct 21807386 GTGGATACGCTTTTCGTAGCCCAACTGCGGCAAGTACTTCTCCGAGAAGGTAAAGATCTT 21807327 Query 2411520 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 2411579 ||||||||| || || ||||||||||| || | ||||| || |||||| || ||||| Sbjct 21807326 GCGCTGGTCCACGCCACCGAACTGGGCGTCCACCTTGAGGTACTCCTCGTCCAGAGCCTG 21807267 Query 2411580 CATGAGCGGG-TAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCT---TGACCACCT 2411635 || || |||| |||| | | ||| | |||| |||| | |||| |||| Sbjct 21807266 CA-GACCGGGATAGAGCAAACCGGACAGCAGAGGGTAC---TCCACTTGTTTGACAACCT 21807211 Query 2411636 GGGCGGCGGCCTT--TTGCGCCGTGCCGACGGTC-ACGCGCGCCGTCAGGCGCAAGAGGT 2411692 ||| | ||||| |||| |||| | | | ||| | || | || | | | Sbjct 21807210 CCGCGCCCGCCTTCTTTGCATCGTGTTGCGTGACCACG-GAGCTG--AGCTTGTATACAT 21807154 Query 2411693 CGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCA 2411752 | || ||||| | | |||| || |||||||| || || | || |||| Sbjct 21807153 CCAGGGTGTACTCCTTGGACAGCTGATAGTCGCTGCCCTTGACGAACTTCAGCTTCTCCA 21807094 Query 2411753 GCGGGACGCCAAT-GTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGG 2411811 |||| || || || | ||| | ||||||||||||| | |||||| | || || Sbjct 21807093 GCGGAACTCCGATTGAGCTCAA-CATGGCCTTGATGACTTGCTCGTAGTACTGGGTGCGC 21807035 Query 2411812 TGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAG 2411871 |||| | || ||| || | ||| ||||| || | |||||| | ||||| || Sbjct 21807034 AGCTCAAGCAGAGACCAGGGTGCCTTCATGTTGTCCAGATAGGCGTGGAGATCGGCGAAC 21806975 Query 2411872 AGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAG 2411931 ||||| ||||| ||||| |||| || || ||||| | || | |||||||| || Sbjct 21806974 AGGATGGTCACCTCGCATCCTGCCTTCAGGAAATCGGCAATCTTCGACATGGGCACGAAA 21806915 Query 2411932 TAGCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 ||| | | ||| ||||||||||| | ||| || ||||| || || Sbjct 21806914 TAGGCGACATGTGGCTTGCCCGTTGTCGCTGTTCCCCAGTAGAT 21806871 Score = 95.1 bits (104), Expect = 2e-13 Identities = 221/331 (67%), Gaps = 2/331 (1%) Strand=Plus/Minus Query 2019047 GGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGA 2019106 ||||||||| || | ||| ||| ||||| | | ||| |||| | | | | || Sbjct 4707015 GGGCAAGACAACTACCATACAGTGTCTGGCCAGGATTCTCCTGGGAGACAGCTACAAGGA 4706956 Query 2019107 GGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCAT 2019166 ||| || ||||| || ||||| || | ||||| || | || || || || | | || Sbjct 4706955 GGCTGTCCTCGAGCTAAATGCCTCCAATGAGCGAGGAATCGATGTGGTCCGCAACAAGAT 4706896 Query 2019167 CAAGCATCACGCTTCGAAAAGAATCGAC-CTGCCGCCCGGCCGCCACAAGGTGATCATCC 2019225 |||| || | ||| | ||| ||||| | ||| | |||||| | | || | Sbjct 4706895 CAAGATGTTTGCCCAGCAAAAGGT-GACACTGCCACGGGGCAGGCACAAGATTGTGATTC 4706837 Query 2019226 TCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAA 2019285 | || ||||| ||| || | ||| || ||||||||||| || || |||||||| | Sbjct 4706836 TGGACGAGGCTGACAGCATGACGGAGGGCGCCCAGCAGGCACTGCGCCGAACCATGGAGA 4706777 Query 2019286 AGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAG 2019345 |||| || ||| ||||| || || |||||||||||||| || | |||| ||| Sbjct 4706776 TCTACAGCAGCACCACGCGTTTCGCCCTGGCCTGCAACACCAGCGAGAAGATCATAGAAC 4706717 Query 2019346 CCCTCCAGAGCCGTTGCGCCATCTTGCGCTT 2019376 | ||||| ||| |||||||| |||| || Sbjct 4706716 CTATCCAGTCCCGCTGCGCCATGCTGCGATT 4706686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915382319440997