Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq119 87.8 1e-12 seq61 86.0 5e-12 >seq119 Length=24197627 Score = 87.8 bits (96), Expect = 1e-12 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 105081 GGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCC 105140 || |||||||| || ||||| |||||||||||||| | || ||||||||||| ||| || Sbjct 11134075 GGTCTGCACGGATTCCACGTGCACGAGTTCGGCGACAACACCAACGGCTGCATGTCGTCC 11134016 Query 105141 GGCGAGCACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCC 105181 || ||||||||| ||||| | || | | ||||||||||| Sbjct 11134015 GGACCGCACTTCAATCCCTATG-GCAAGGAGCACGGCGCTCC 11133975 >seq61 Length=22324452 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||| | || ||||| ||||| ||| | || |||| || Sbjct 4253543 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4253602 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| ||||| || ||| | ||| |||||| Sbjct 4253603 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAG 4253662 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||||| | || || | ||||||||| Sbjct 4253663 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGTCCGACTACAAC 4253722 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 4253723 ATCCAGAAGGAGTCCACCCTCCACTTGGTG 4253752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398837311570747