Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq473 102 6e-16 seq1 86.0 5e-11 >seq473 Length=28832112 Score = 102 bits (112), Expect = 6e-16 Identities = 446/703 (63%), Gaps = 2/703 (0%) Strand=Plus/Plus Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238 || || ||||| || || || || ||||| |||| | || | ||| | ||| | | Sbjct 15363413 GTGACCAGACGGTTGTCGAAGTCCTCACCACCCAGATGCGTGTCTCCGGCCGTGGACTTG 15363472 Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 || | || | || || || | |||| | | |||||| ||| || || |||| | Sbjct 15363473 ACCTCAAAGATACCGTCATCGATCGACAGGATGGACACATCAAAGGTGCCGCCGCCCAGA 15363532 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 || || || || || || ||| | || || || ||||| || |||| |||| Sbjct 15363533 TCGAAGATGAGCACGTTGCGCTCTCCAACAGCCTTCTTGTCCAGACCGTAAGCAATAGCA 15363592 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || || || || || || || || | || || || |||||||| || | || || || Sbjct 15363593 GCGGCTGTGGGCTCGTTGATGATACGCAGCACGTTCAGACCAGCGATGGTGCCGGCGTCC 15363652 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || || | || || ||||| || || || || || || || || || | || Sbjct 15363653 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCCGGCACGGTGATGACAGCGTTGGTC 15363712 Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538 || || || | ||| || || || | ||||| || | | | ||| || || Sbjct 15363713 ACAGTCTTGCCCAGATAGGCCTCGGCGGTCTCCTTCATCTTGGTGAGCACCATCGAGGAG 15363772 Query 282539 ATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597 || | || || ||| | | ||| || | | || | || |||| | || || Sbjct 15363773 ATCTCCTCGGG-GAAGAAGGTCTTCTTCTCGTCCTTGTAGGTCACCTCAATCTTGGGCTT 15363831 Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTC 282657 | | | | | || | || ||||| | ||||| || || || ||| ||| Sbjct 15363832 GCCATCGGCGCTGACCACCTCGAAGGGCCAGTGCTTCATGTCCGACTGCACAGCGGCGTC 15363891 Query 282658 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGC 282717 || || | | |||||| || || || || || || || || | ||| || || | || Sbjct 15363892 ATCGAACTTGCGACCAATCAAACGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATCGC 15363951 Query 282718 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 282777 | || | ||||| || ||||| |||||| | || || || || || | |||||| || Sbjct 15363952 CACCTGGTTCTTGGCGGCGTCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGA 15364011 Query 282778 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 282837 |||||| || |||||||| || || || || || || || || || |||| || | || Sbjct 15364012 TGGAGTGGTACGATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACAC 15364071 Query 282838 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 || || || | || || || ||||||||||||| |||| Sbjct 15364072 GCCCACGCACGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 15364114 >seq1 Length=21770863 Score = 86.0 bits (94), Expect = 5e-11 Identities = 200/300 (67%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| | ||| || || ||||||||||| | ||||| || || || || | ||| Sbjct 15001087 ACGCTGATCGAAGTCCTCACCTCCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAA 15001028 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | ||| | || | | || || | ||||| ||| || || |||| ||| || | Sbjct 15001027 CACTCCGTTATCGATGGTCAGCAGGGAGACATCGAAGGTACCGCCGCCCAAATCGAACAC 15000968 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 ||| || ||| | || | | | || || || ||||| || |||| |||||||||||| Sbjct 15000967 AAGCACGTTCTTCTC---GCCCTCCTTCTTGTCCAGACCGTAGGCAATAGCAGCAGCAGT 15000911 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 ||||| || || || | || || | ||||| ||||| || ||||| || || || Sbjct 15000910 GGGTTCGTTGATGATGCGCATCACCTGCAGACCGGCAATCACACCAGCATCCTTGGTAGC 15000851 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485 || | || | |||||| || || || || ||||| | || |||| || | |||||| Sbjct 15000850 CTGACGCTGGGCATCGTTGAAGTAGGCTGGCACAGTGACGACAGCATGGGTGACCTTCTT 15000791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740231595027798