Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq61 113 8e-20 >seq61 Length=22324452 Score = 113 bits (124), Expect = 8e-20 Identities = 204/296 (69%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 183014 ATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTT 183073 ||||| |||||||| | | ||| | ||| || || | || ||||||||||| | | Sbjct 16380783 ATGACGACCTATGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGAAAAATGCACGGCT 16380842 Query 183074 TTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTT 183133 |||| || ||||||||||| |||||||| || |||||||| ||| || || || || | Sbjct 16380843 TTTTGCGGATGTACTGGGCCAAAAAGATTCTGGAATGGACTGCAACCCCAGAGGAGGCGT 16380902 Query 183134 TGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACG-GATCCTAACGGA 183192 || || ||| ||||| | || ||| || || || ||| ||||| ||||| Sbjct 16380903 TGGAGTACGCGATCCTGCTGAACGACAAATACAGTCTGGATGG-ACGCGATCCCAACGGC 16380961 Query 183193 TACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCT 183252 || || || || |||||||| ||| |||| | || |||| | ||||| || | || Sbjct 16380962 TATGTGGGCTGCATGTGGTCAATTGGCGGCGTCCATGATATGGGTTGGAAGGAGCGGGCT 16381021 Query 183253 ATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 183308 || || || ||| | | || ||||| ||| || | | || ||||| ||||| Sbjct 16381022 ATTTTCGGCAAGGTTCGGTACATGAACTATCAGGGATGCAAACGCAAATTCGATGT 16381077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903319469885280