Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq61 309 4e-79 >seq61 Length=22324452 Score = 309 bits (342), Expect = 4e-79 Identities = 483/680 (71%), Gaps = 28/680 (4%) Strand=Plus/Plus Query 146841 GAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGG-GT 146899 |||||| || ||||||| |||| | | | ||| | |||||||| |||||||| || || Sbjct 2961938 GAAATCCTCGATGTCCTGCACCTGACGCTTAATGATCAGCTTGGGAAAGGGTCGCGGTGT 2961997 Query 146900 TC-CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCC 146958 | ||| |||||| ||||| ||||| || ||||| ||||||||||||| ||| ||| Sbjct 2961998 GCGCTG--CAGCTGCTCCTTCAGCGGCTCGACATGGTTCAGGTAGACGTGCGTGTCGCCC 2962055 Query 146959 AGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGC 147018 | |||||| |||||||| |||||||| || || ||||| ||||| | ||||| ||||||| Sbjct 2962056 ATGGTGTGGACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCGATCATGTGGGTGAGC 2962115 Query 147019 AGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTAC 147078 || | ||| ||| |||||||| || || ||||||||||| || | ||||||||| Sbjct 2962116 AGGGCATAGGAGGCGATGTTGAATGGCACGCCCAGGCCCATATCGGCGCTCCTCTGGTAG 2962175 Query 147079 AGCTGGCACGAGAGCTCCCCG------TCGGCCACGTAAAACTGGCACAGGATGTGGCAC 147132 ||||| ||||| ||||| ||| | || ||||||||||| |||| ||| ||| Sbjct 2962176 AGCTGACACGACAGCTCACCGCGCGTCTGGGAGACGTAAAACTGCGCCAGGCAGTGACAC 2962235 Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG 147192 || ||||| ||||| || | ||| || ||||| ||||| | | | |||| | Sbjct 2962236 GGAGGCAGGGCCATCTTCGGGATATCCAGCGGATTCCAAGCCGACATGATGATGCGCC-G 2962294 Query 147193 CTCT-CGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCC 147251 ||| |||||| |||| || ||||| ||| | |||||| || | |||| ||| Sbjct 2962295 ATCTGAGGGGTTATTCTTGATGGTGTCGATCACCTGGCGCAGCTGATCGATTCCCTTGCC 2962354 Query 147252 CCCGTAGTTTGTC-CCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGT 147310 | |||| | ||| ||||| ||||| ||||| || |||| |||||||||||||| Sbjct 2962355 GCTGTAG-TCGTCGTCGCAGGTGGCGTACTCCGCCCCGAAATGCCGCCACTGGAAGCCGT 2962413 Query 147311 ACACTGGCCCCAGGTCGCC----GGGCTTTCTGTGCGAGAAGCCCGCCCGCTTG---AGA 147363 |||| || ||||| ||||| | || ||| || ||| | || ||||| ||| Sbjct 2962414 ACACCGGGCCCAGATCGCCAACTGCGCGTTC----CGTGAA---CCCCAGCTTGTCCAGA 2962466 Query 147364 AACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAG 147423 ||||| || | || ||||||||||| ||| ||| || ||| ||| | | Sbjct 2962467 AACTCTCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTCGCCTGCAGCAACTTGGCG 2962526 Query 147424 TCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTC 147483 ||||| |||| | |||||| ||||||||||| || | | | ||||||| | Sbjct 2962527 TCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACAGCGCGGAAGAAGACCCGC 2962586 Query 147484 TTGGTGGTCAGCAGGGGGAA 147503 |||||||||||||| || || Sbjct 2962587 TTGGTGGTCAGCAGTGGAAA 2962606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583428754087200