Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq104 219 6e-51 seq61 100 4e-15 seq119 86.0 9e-11 seq107 86.0 9e-11 >seq104 Length=21139217 Score = 219 bits (242), Expect = 6e-51 Identities = 367/523 (70%), Gaps = 21/523 (4%) Strand=Plus/Plus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--A 1455853 |||| |||||||| || ||||||| ||||||||| || | | | || || || | Sbjct 9083156 AGGCTGAGGCCTCTTTCTGGACCGTCGAGGAGGTGGATTT----GTC--CAAGGACCTTA 9083209 Query 1455854 CTGGGTGTCGC----TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 ||| || | | ||| ||||||||||||||||||||| |||||| || ||||| | Sbjct 9083210 CTGACTGGCACCGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCT 9083269 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 | ||||||| |||||||||||| |||||| |||| | ||||| | | ||||| Sbjct 9083270 T-CGCCGCCTCCGATGGCATCGTAAACGAGAATCTGGTGGAACGCTTCAGTCAGGAGGTG 9083328 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 || | |||||||||| | || ||||| || ||||| ||||| || ||| | ||||| Sbjct 9083329 CAGATCACAGAGGCACGCTGCTTCTACGGCTTTCAGATTGCCATGGAGAACGTGCACTCG 9083388 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 || | ||| | ||||||||||| ||| || ||| ||| | || || |||| Sbjct 9083389 GAGATGTACAGTGTGCTGATCGACACTTACATCCGGGATCCGCACCAGCGAGAGTACCTG 9083448 Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149 || ||| || || ||| ||||| | |||| | ||||| |||||||| | ||| Sbjct 9083449 TTCAACGCTATTGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTTTCCTGG 9083508 Query 1456150 A--TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGA 1456206 | || | | | |||| | |||| ||||| || ||| |||||||| ||| || Sbjct 9083509 ATTTCCTCTAAGTCGGCC----AATTTTGGGGAGCGCATCATCGCCTTTGCCGCCGTGGA 9083564 Query 1456207 GGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCAT 1456266 ||||||||||||| ||||| ||| | | || || ||||| ||||||||||| || || Sbjct 9083565 GGGCATCTTTTTCAGCGGCAGCTTCGCCTCTATTTTCTGGCTTAAGAAGCGCGGTCTTAT 9083624 Query 1456267 GCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||| || | | ||| |||||| ||||| ||||||||| Sbjct 9083625 GCCTGGAC-TGACCTTCTCCAACGAGCTTATCTCTCGCGACGA 9083666 Score = 86.0 bits (94), Expect = 9e-11 Identities = 160/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAAC-AAGTC 724969 || |||||||| ||||||||||| || || ||| | ||| | || | ||| | Sbjct 1307934 ATTTACAAGGTTCTCAAGCAGGTCCATCCTGACACC-----GGCAT--TTCATCTAAGGC 1307986 Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 ||| ||||||||| ||||| || || || |||| ||||| | ||||||| Sbjct 1307987 GATGAGCATCATGAACAGCTTTGTAAATGATATTTTCGAGCGCATTGCTGCCGAGGCGTC 1308046 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| ||||| | || |||||||||| || ||| || || || ||||| || || || Sbjct 1308047 TCGTCTGGCTCACTACAACAAGCGCTCGACCATCACCAGTCGAGAAATCCAAACGGCTGT 1308106 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| || || |||||| ||| || ||| ||||| |||| Sbjct 1308107 TCGCCTGCTTCTGCCGGGAGAGTTGGCCAAGCATGCTGTCAGTGAGGGAACCA 1308159 >seq61 Length=22324452 Score = 100 bits (110), Expect = 4e-15 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||||||||||| || ||||||||| ||||||||||| |||||| | || || Sbjct 13005462 GGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAACCTTGGCACTCGGATGTC 13005403 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | ||||| || || || ||| ||||||| || |||| || ||| ||| Sbjct 13005402 TTTGAGTTCCTGGAACTGAAGAAAAACACTGGCAAGGAAG----AGAATCG--CGCCCGC 13005349 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 ||||||||||||| |||||||| ||| || || ||| ||| ||| | || || Sbjct 13005348 GATCTCTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAATGGC 13005289 Query 261968 GACTGGTCGCTCTTTTGCCC 261987 || ||||||||| | ||||| Sbjct 13005288 GATTGGTCGCTCATGTGCCC 13005269 >seq119 Length=24197627 Score = 86.0 bits (94), Expect = 9e-11 Identities = 219/331 (66%), Gaps = 2/331 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 || ||||| ||||| || ||| ||| | | || |||| | || || | ||||||| Sbjct 4706686 AATCGCAGCATGGCGCAGCGGGACTGGATAGGTTCTATGATC-TTCTCGCTGGTGTTGCA 4706744 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 ||||||||| || ||||| || || | | | |||||||| || || ||||| || Sbjct 4706745 GGCCAGGGCGAAACGCGTGGTGCTGCTGTAGATCTCCATGGTTCGGCGCAGTGCCTGCTG 4706804 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 ||| || ||| | || ||| |||||||| || || | |||||||| | || | || Sbjct 4706805 GGCGCCCTCCGTCATGCTGTCAGCCTCGTCCAGAATCACAATCTTGTGCCTGCCCCGTGG 4706864 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 ||| ||| ||| | ||| ||||| | ||||| || || || | || || Sbjct 4706865 CAGTGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGGACCACATCGATTCCTCG 4706924 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171 ||| | || || || || ||||| || ||||| | | | | |||| ||| | | Sbjct 4706925 CTCATTGGAGGCATTTAGCTCGAGGACAGCCTCCTTGTAGCTGTCTCCCAGGAGAATCCT 4706984 Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCC 333202 ||||| ||| ||| | || ||||||||| Sbjct 4706985 GGCCAGACACTGTATGGTAGTTGTCTTGCCC 4707015 >seq107 Length=4505 Score = 86.0 bits (94), Expect = 9e-11 Identities = 160/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAAC-AAGTC 724969 || |||||||| ||||||||||| || || ||| | ||| | || | ||| | Sbjct 1871 ATTTACAAGGTTCTCAAGCAGGTCCATCCTGACACC-----GGCAT--TTCATCTAAGGC 1923 Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 ||| ||||||||| ||||| || || || |||| ||||| | ||||||| Sbjct 1924 GATGAGCATCATGAACAGCTTTGTAAATGATATTTTCGAGCGCATTGCTGCCGAGGCGTC 1983 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| ||||| | || |||||||||| || ||| || || || ||||| || || || Sbjct 1984 TCGTCTGGCTCACTACAACAAGCGCTCGACCATCACCAGTCGAGAAATCCAAACGGCTGT 2043 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| || || |||||| ||| || ||| ||||| |||| Sbjct 2044 TCGCCTGCTTCTGCCGGGAGAGTTGGCCAAGCATGCTGTCAGTGAGGGAACCA 2096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177027721719926