Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq61 381 8e-101 >seq61 Length=22324452 Score = 381 bits (422), Expect = 8e-101 Identities = 1205/1849 (65%), Gaps = 34/1849 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||||| | || || ||||| || ||||||||||| |||||||| ||| Sbjct 13004075 GTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCCGGTTTTGAGA 13004134 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || |||| |||||| || || || ||||| || |||| || || | | Sbjct 13004135 CCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTTGGCTCTGCCACA 13004194 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| || | || ||||| ||||| ||||| || || | ||| || |||||||| || Sbjct 13004195 TGAATGTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCGGCCATTTTAATC 13004254 Query 68554 ATACTCTTT--TGAGGAATTTCCCAAATAGTCTT--AAAAATCTGTTTGATATCATCTGG 68609 | ||| |||| |||||||| | ||||| | | ||| || | | ||||| Sbjct 13004255 GTGGACTTGACTGAG--ATTTCCCACACCGTCTTGTAGAGATCGC---GA-ACCTTCTGG 13004308 Query 68610 ---AAGGC-TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCA 68664 | ||| ||| | ||||| || || || | |||||| || ||||| || || Sbjct 13004309 GGGATGGCCTCGATGTTTTGGATTGAGCCCCGGCTGGATATGATCTGGTTCTTCATGTCG 13004368 Query 68665 TCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAAT 68724 || | |||||| | ||| |||| | | || | ||| | || || | |||||| Sbjct 13004369 TCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGACCACCTGAAAT 13004428 Query 68725 TCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTA 68784 || || || | |||| | ||||| || || ||||||| || || | |||||||| Sbjct 13004429 TCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATTCATTG 13004488 Query 68785 TTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTA 68844 || |||| ||| ||||| || || ||||| ||||| || || |||| | || | Sbjct 13004489 TTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCAGGGAGTTCCGG 13004548 Query 68845 AGACCATG-TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTAC 68903 | || || || | |||| || || || | | ||| ||||| || | | ||| || Sbjct 13004549 ACGCCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAGAGGTTCGTTGGGAC 13004607 Query 68904 AACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTC 68963 | ||| | ||||| || | |||||| || || | || | || ||||| Sbjct 13004608 CTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCTCGTAGGTTTC 13004667 Query 68964 ATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGT 69023 || || || || | || |||||||| || || || || || || || ||||| || Sbjct 13004668 GTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCATAGTAAATGGT 13004727 Query 69024 TTCGAAAATCTTCTTATTGA---GATCTTGTGCTTCTAGACTATCGAATGGATAATGTAA 69080 ||||||||||| || ||| | || | |||||| ||| || |||| | | | Sbjct 13004728 TTCGAAAATCTGCTGATTCAACAGACCG---GCTTCTTCACTCTCATATGGGAATCGCAT 13004784 Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 || || | || || || ||||||||||| ||||| || | || | || ||| ||| Sbjct 13004785 GAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGCCTCAAATT 13004844 Query 69141 TGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 || | | || ||||| | |||||||| || ||||| ||||| || ||||||||| Sbjct 13004845 GGACTTCTTTGCCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTAAGATTTTT 13004904 Query 69201 GACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TCGTC-CATCTATAAC 69257 |||| || || |||||||| || |||||| | || || | | | || Sbjct 13004905 TGTAACTATCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGTCTTCTCCGGTGTGAC 13004964 Query 69258 AAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATA 69317 |||||| || || || | ||||| || || || ||||||| ||||| | | || Sbjct 13004965 AAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCGCGGAGTA 13005024 Query 69318 TTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACT 69377 || | || || || || | || || || ||||| || || | ||| |||||||| || Sbjct 13005025 TTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGATTGCT 13005084 Query 69378 CTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 69437 ||| |||| || ||||||||| | || || ||||| | |||||||| | || | || Sbjct 13005085 CTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTC 13005144 Query 69438 GATAATAGATTTCCAAACGACCCTAGCATTTA--TTACGGTCTTGTAACGCTTCTCTTTT 69495 || || | ||| | | ||| || | | ||| ||| ||| ||| | Sbjct 13005145 AATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGG--TTGGCACGACCCTCCTGC 13005202 Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 || |||| ||| ||| |||||||||||| ||||| ||||| | | ||||| ||| Sbjct 13005203 TCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCAT 13005262 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 | | || ||||| | ||||| | ||| ||| || |||||||| || |||||| Sbjct 13005263 TTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAAGAGATCG 13005322 Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttt 69675 || ||||| || || ||||||||| | || | ||| ||||| || || || ||||| Sbjct 13005323 GGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTGTTTTTC 13005382 Query 69676 ttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACT 69735 || || || || ||||| | | ||| || ||||| ||||| || || || || | | | Sbjct 13005383 TTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCAAAGGCA 13005442 Query 69736 CCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGC 69795 || || || || ||||||||||| | || | || || || |||| |||||| Sbjct 13005443 CCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAGACCCTCAGC 13005502 Query 69796 ATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGA 69855 || |||| | ||||| || | || ||||| ||| |||| | | || |||| ||| Sbjct 13005503 ATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTTGCACGA 13005562 Query 69856 AT--ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTT 69913 || | | | | | || || || || || || || ||||| | ||| || | | Sbjct 13005563 ATGCAATGCACGTTG--AGGCCGATGCCACCAGCAGACTTGGAGATCATAGCGCACTGCT 13005620 Query 69914 TCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAG 69973 || | | |||| ||||| ||| || | ||||| | || || ||||| | Sbjct 13005621 CCACAGACTTGAATATGCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAACACGACG 13005680 Query 69974 ACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATT 70033 ||| || || | | || | || ||| | || || ||||| || ||||| | Sbjct 13005681 ACAGCTGCGGACGGTTTGTGGCAGCGGCAAACAGCGTGGGCGATGCATGCGTGAAGTAGC 13005740 Query 70034 TTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTA 70093 || || || |||||||| ||||| | || | || || ||| ||| ||||| | Sbjct 13005741 GCTCCGAGAGGAGATTGTAGGTTTCCACGGCCGCATCAATGTCCTCTCCATGGATTCCGA 13005800 Query 70094 TCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACA 70153 |||| || ||||||| ||| ||||| ||||| || | | || ||| | || | || Sbjct 13005801 TCGCCACGCGCATCAGCATGTGCTGTGGTCGCTCGGCGATCTTTCCGTTTCTCTTGAGCA 13005860 Query 70154 GGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 | || || ||||| || ||||| ||||||||||| || |||||| Sbjct 13005861 GATAGGAGCGCTCCAGGGTCTTAAAGCCAAAATAGTTATAGCCAAAGTC 13005909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686839052997720