Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq104 132 4e-26 seq473 113 4e-20 seq1 109 4e-19 >seq104 Length=21139217 Score = 132 bits (146), Expect = 4e-26 Identities = 445/678 (66%), Gaps = 46/678 (7%) Strand=Plus/Plus Query 43929 CAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGT 43988 |||| ||||| || || || || ||||| |||||||| || || | || ||||| |||| Sbjct 9083336 CAGAGGCACGCTGCTTCTACGGCTTTCAGATTGCCATGGAGAACGTGCACTCGGAGATGT 9083395 Query 43989 ACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTA 44045 ||||| | ||||| || || |||||| ||| |||| || || | | |||| | Sbjct 9083396 ACAGTGTGCTGATCGACACTTACATCCGGGATCCGCACCAGCGAGAGTACC---TGTTCA 9083452 Query 44046 ATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA 44105 | || || ||||| | || || | || | || ||||||||||||||| ||||| Sbjct 9083453 ACGCTATTGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTTTCCTGGAT-- 9083510 Query 44106 ATTCAAATGATTC------TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCA 44159 ||| | | || |||||| || || | |||| ||||| | ||||| |||| Sbjct 9083511 -TTCCTCTAAGTCGGCCAATTTTGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCA 9083569 Query 44160 TTTTCTTTTCA--GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 | | |||||| || || || | || || ||| | ||||| || ||| | ||||| Sbjct 9083570 TCT--TTTTCAGCGGCAGCTTCGCCTCTATTTTCTGGCTTAAGAAGCGCGGTCTTATGCC 9083627 Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTG- 44276 ||| |||| || || || ||| | || ||| || || ||||| || ||||| |||| Sbjct 9083628 TGGACTGACCTTCTCCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGC 9083687 Query 44277 CTTGCT--TGTTACTTGGATATCTAGGAGACGA--TAAGCCTTCATGTAAGACAATTACA 44332 | |||| |||| | | | | | || ||| |||| | || || | Sbjct 9083688 CGTGCTGATGTT-CCAGCACCTGGTGCAG-CGACCCAAGC------GCGAGCGCATCATC 9083739 Query 44333 GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTA 44392 || || | || ||||| ||| || || ||||| | || || | ||||| Sbjct 9083740 GAGATCATCCGCGACGCAGTGGCGATTGAGCAGGAATTCCTCACCGATGCCCTGCCTGTT 9083799 Query 44393 AATTTAATAGGAATGAA---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGAT 44449 |||||||| || ||||| ||| | ||||| ||| || || || | | | || ||| Sbjct 9083800 AATTTAATCGGCATGAATTGTGACC---TGATGTCCCAGTACATAGAGTTCGTGGCGGAT 9083856 Query 44450 CGTTTACTTTTGGAACTGG--GTTGCGATAAAC-ACTATATTGTACAA-AACCCGTTTGA 44505 ||||| ||| |||| ||| |||| || | | || | | ||| ||||| || | Sbjct 9083857 CGTTTGCTTGTGGAGTTGGGCGTTGGGAAGATCTACAACA----CCAAGAACCCCTTCAA 9083912 Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGA 44565 || ||||| | || ||| |||| || || || ||||||||||| ||| || ||||| Sbjct 9083913 CTTCATGGAGATGATATCGCTGGATGGAAAGACCAACTTTTTTGAGAAAAAGGTGGGAGA 9083972 Query 44566 ATATCAGCGAATGGGCGT 44583 || ||||| ||||| || Sbjct 9083973 GTACCAGCGCATGGGAGT 9083990 >seq473 Length=28832112 Score = 113 bits (124), Expect = 4e-20 Identities = 341/519 (66%), Gaps = 12/519 (2%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || || ||||| | ||| | | || || || ||| | || || | ||| Sbjct 13972746 CCCAAGATCGTGAACGGTCCCCAGATCCTGGACAAGTACGTGGGTGAGTCAGAGGCCAAT 13972687 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || || |||| || || || || ||||| |||| ||||| || | || ||| Sbjct 13972686 ATCCGGCGACTGTTCGCCGAGGCCGAGGAAGAGGAAAAGCGTTTGGGACCGAACAGTGGG 13972627 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605 ||||||| || || | || ||| | || || || || ||| | || || ||| Sbjct 13972626 CTGCACATCATCATCTTCGACGAAATCGATGCCATTTGCAAGGCTCGCGGATCGGTGGCC 13972567 Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| |||||| || || || || ||||||||||| ||| | || | |||||||| Sbjct 13972566 GGTAATAGTGGAGTCCACGATACGGTCGTCAATCAACTGCTGGCCAAGATCGACGGTGTA 13972507 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| || || | || || || ||||| || || | ||| | || || Sbjct 13972506 GAGCAGTTGAACAACATCCTGGTGATAGGAATGACCAACAGGCGGGATATGATCGATGAG 13972447 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| | | ||||| || || |||||| | | || || || | ||| || | || Sbjct 13972446 GCCCTGCTGCGACCTGGCCGCTTGGAAGTTCAAATGGAGATAAGCTTGCCGAACGAGCAG 13972387 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 ||||| || | ||| | ||||| | ||| ||| | ||||| | ||| || Sbjct 13972386 GGACGCGTCCAGATTCTCAACATCC--ACACCAAGCGGATGCGCGACTTCAACAAGATAG 13972329 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 || |||||| || | | || |||||||| || || || |||| || |||||||| Sbjct 13972328 CTGGCGATGTGGA-CAACAATGAAATTGCGGCCAGAACAAAGAACTTCAGTGGCGCAGAG 13972270 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 || |||||| | || || || |||||||| | ||| ||| Sbjct 13972269 CTGGAGGGACTGGTTAGAGCTGCCCAATCCACTGCCATG 13972231 >seq1 Length=21770863 Score = 109 bits (120), Expect = 4e-19 Identities = 340/519 (66%), Gaps = 12/519 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || || || |||||||| | || | | || || || || ||||||| | ||| Sbjct 7431241 CCGAAGATCGTCAATGGTCCGCAGATTCTCGACAAGTACGTGGGCGAATCGGAGGCCAAT 7431300 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || || || |||| || || || || || || | || || | || | ||| ||| Sbjct 7431301 GTCCGGCGGCTGTTCGCCGAGGCGGAGGAGGAGGAGAAGCGCCTGGGTCCCAACAGTGGA 7431360 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605 | || ||||| || | || || | || || || || |||||| | || || ||| Sbjct 7431361 CTACATATTATCATCTTCGACGAGATCGATGCCATTTGCAAGCAACGTGGCTCCGTGGCC 7431420 Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || ||| || || ||||| || ||||||||| | || | ||| | || || || Sbjct 7431421 GGCAATAGTGGTGTCCACGACACCGTCGTCAATCAATTGCTAACCAAAATCGATGGCGTG 7431480 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||||||| ||| | |||||||||||||| ||| | ||| | || ||| Sbjct 7431481 GATCAGCTGAATAACATTCTCGTTATTGGCATGACCAATCGCAGGGACATGATCGACGAG 7431540 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || || | ||||||||||| | ||| | | || || || | | | ||| | || Sbjct 7431541 GCTTTGCTGCGACCCGGTCGCCTCGAAGTCCAAATGGAGATCAGCCTGCCCAACGAGCAG 7431600 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 || || || | || | || || | ||| ||| | ||||| | ||| | | Sbjct 7431601 GGTCGCGTCCAGATCCTCAATATCC--ACACCAAGCGGATGCGCGACTTCAACAAGATCA 7431658 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 |||||||||| || | | || || ||||| ||| ||||| || | || || || ||| Sbjct 7431659 ATGACGATGTGGA-CAACAAGGAGATTGCCGCGCTGACCAAGAATTTCAGTGGTGCCGAA 7431717 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 || |||||||| || | |||||||| || | ||| ||| Sbjct 7431718 CTGGAGGGATTGGTCCGTGCCGCCCAGTCGAGTGCCATG 7431756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397416652228615