Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq61 170 2e-37 seq119 100 2e-16 seq1 98.7 8e-16 >seq61 Length=22324452 Score = 170 bits (188), Expect = 2e-37 Identities = 985/1565 (63%), Gaps = 39/1565 (2%) Strand=Plus/Plus Query 130412 ACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTTTTG 130471 |||||||| ||||||||||| | || ||||| ||||||| ||| ||||| || |||||| Sbjct 13004072 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCCGGTTTTG 13004131 Query 130472 AGTCCAATTTTGTGTCCATAATT----GTGGATGCTGCACATTGTTTGGTAATTGGGTTG 130527 || ||| ||| ||| | | ||| ||| | || | || ||| || || | Sbjct 13004132 AGACCAGCTTT----CCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTTGGCTC 13004187 Query 130528 CGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCAT 130587 ||||| ||||||| || || ||||| || || || || | || || ||||| Sbjct 13004188 TGCCACATGAATGTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCGGCCAT 13004247 Query 130588 GTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTT 130647 | | | ||| || | || ||||| | |||||||| ||||| | || | | Sbjct 13004248 TTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTAGAGATCGCGAACCTTCTG 13004307 Query 130648 GGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACT 130707 ||| ||| | | || ||| | || | ||| ||| || | ||| ||| Sbjct 13004308 GGGGATGGCCTCGATGTTTTGGATTGAGCCCCGGCTGGATATGATCTGGTTCTTCATGTC 13004367 Query 130708 TTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAA 130767 | || |||| | |||| || || | |||||||| || | | ||||| Sbjct 13004368 GTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGACCACCTGAAA 13004427 Query 130768 ATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTT 130827 || || | ||| || || || ||| ||||| | || | || || |||||||| || Sbjct 13004428 TTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATTCATT 13004487 Query 130828 GTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACG 130887 |||||| | || || ||||| | || |||||||| || || | || || || || Sbjct 13004488 GTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCAGGGAGTTCCG 13004547 Query 130888 AAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTT 130947 | |||||| | |||| ||||| || | ||| ||||| ||||| ||| Sbjct 13004548 GACGCCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCA----GAGGTTCGTTG 13004603 Query 130948 G-ACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACG 131006 | || |||| |||||| || | || | || || || || | || ||| ||| | | Sbjct 13004604 GGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCTCGTAGG 13004663 Query 131007 ATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAA 131066 |||||| || || | | ||||| || ||| |||||||| || || || |||| Sbjct 13004664 TTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCATAGTAAA 13004723 Query 131067 TGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCA 131126 |||||||| ||| || | ||| || | |||| | ||||| || || ||| || Sbjct 13004724 TGGTTTCGAAAATCTGCTGATTCAACAGACCGGCTTCTTCACTCTCATATGGGAATCGCA 13004783 Query 131127 TTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAAT 131186 | | || | ||||| |||| ||||| | |||| ||| || || | || | |||| Sbjct 13004784 TGAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGCCTCAAAT 13004843 Query 131187 TACATTTACGCGAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATT 131244 | | || | | | || ||||||| ||| || ||||| || ||||| | ||| Sbjct 13004844 TGGACTTCTTTG--CCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTAAGATT 13004901 Query 131245 GCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAG 131304 || || | ||||| || | || | ||||||| |||| | || | Sbjct 13004902 TTTTGTAACTATCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGT---CTTCTCCGG 13004958 Query 131305 GTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATC 131364 | ||||| || | || || || || || || ||||| | || || | Sbjct 13004959 TGTGACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCGC 13005018 Query 131365 GCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTG 131424 | | || | ||| ||||| | |||||| || |||| ||| |||||||| | ||| || || Sbjct 13005019 GGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTG 13005078 Query 131425 ATTGCTTTTAGCATT-CACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTT 131483 |||||| || || ||| ||||||| | | |||||| || | || ||||| |||| Sbjct 13005079 ATTGCTCTTCCTGTTGCAC-GCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTT 13005137 Query 131484 GAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGC- 131540 | | ||||| ||| | | | || | || |||| || | || ||||| Sbjct 13005138 GCGCCTCAATGATGGCAAACCACAGGGATT--GAGC-----CTTAACCGTTCGGTTGGCA 13005190 Query 131541 CG--CGT--TTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCC 131596 || | | | ||||| || || |||| | |||| || | | ||| || | | Sbjct 13005191 CGACCCTCCTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGG 13005250 Query 131597 AAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTC 131656 | || |||| | ||| ||||| |||||||| |||| || || || || ||| Sbjct 13005251 AGGCCAGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTC 13005310 Query 131657 ATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTA 131716 || || | ||| || | ||| | ||||| || ||||| | || |||||||| | Sbjct 13005311 ATGAAGAGATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTG 13005370 Query 131717 CCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATAC 131776 || | |||| |||| | | || || || | |||| ||||| ||||||| || Sbjct 13005371 CCAGTGTTTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAA 13005430 Query 131777 ACTGCCATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACGAACCATGTTGTTG 131833 | || | || || ||||| |||||| |||| |||| ||| ||| |||||| Sbjct 13005431 ATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCCACATTGTTG 13005490 Query 131834 TATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTG 131893 | || | || |||||| |||| || |||| |||| || |||| |||| || || Sbjct 13005491 AAGACCCTCAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTG 13005550 Query 131894 CCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGT 131953 || || || | || || |||||||| || || || || | | || ||||| | Sbjct 13005551 CCCTTTGCACGAATGCAATGCACGTTGAGGCCGATGCCACCAGCAGACTTGGAGATCATA 13005610 Query 131954 GCGCA 131958 ||||| Sbjct 13005611 GCGCA 13005615 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || ||||||||| | Sbjct 4253769 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4253710 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||| || ||||| || |||||| | || |||||||| ||||| || || Sbjct 4253709 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4253650 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGT-GGCTTCAAC 27199 | ||||| ||||| ||||||| || | | || | ||||| | |||| || | Sbjct 4253649 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACC 4253590 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | | || || || | ||||| || || |||||||| ||||||||||| || || Sbjct 4253589 TCCAAG-GTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGGCGGC 4253537 >seq119 Length=24197627 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || |||||||| Sbjct 4458895 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 4458954 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || ||||||||||| |||||| | || |||||||| ||||| || || Sbjct 4458955 AGAGTGCGTCCATCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 4459014 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || |||||| |||| | || | ||||||| |||| ||||| Sbjct 4459015 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGC-TCAAC 4459073 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || || | || || |||| ||| ||||| ||||| |||||| Sbjct 4459074 TTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 4459122 >seq1 Length=21770863 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| ||||| || | || || || || || |||||||||||| Sbjct 2176078 TGCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGG 2176137 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| || | ||| || |||||| | || | |||||| ||||| || | Sbjct 2176138 ACAGGGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 2176197 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || |||||| || | | | || | || || | |||| ||| Sbjct 2176198 GGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGC-TCA 2176256 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | ||| || | ||||| || || || ||||| || ||||||||| Sbjct 2176257 ACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATTTGCATA 2176307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424892331892776