Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq6290 179 1e-40 seq4220 109 2e-19 >seq6290 Length=1117 Score = 179 bits (198), Expect = 1e-40 Identities = 155/192 (81%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 22125 TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC 22184 ||| ||| |||| ||| | |||| || ||||||||| || |||| | ||||| |||| Sbjct 926 TTATGCCGCGCCGCGCCGCACATCACACTACTGTTGTGCTTGATTATACTTTCTGACGAC 985 Query 22185 ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC 22244 ||||| | ||||||||||||||||||| ||||| ||||| |||| ||| | ||||||| Sbjct 986 ATGGATACGATCACAAACGGCATGATGATCCTGATTCGCCTCCGGCTTCAACTCCTTGTC 1045 Query 22245 GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC 22304 ||||||| |||||| ||||||| ||||||||| || ||||| | ||||||||||||||| Sbjct 1046 GCCTTGCTTATAATCTTTGCCCTAGGTGAAAACAGGTGCGAATATGTTGTCCATATTGGC 1105 Query 22305 CACGTTTAAATC 22316 | | |||||| Sbjct 1106 GGCCTATAAATC 1117 >seq4220 Length=1707 Score = 109 bits (120), Expect = 2e-19 Identities = 150/206 (73%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 22130 CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA 22189 ||||||||||||| | | ||||||||||| || |||| | |||| ||||| || | Sbjct 1507 CCCCGCCCTGCCATGGAATGTC-TACTGTTGTAAATCTTTAAACTTTCTTCCGACTTGAA 1565 Query 22190 AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCG-GCATCAGCACCTTGTCGCC- 22247 | | || | || ||||||||||| ||||||||| | |||| ||| | Sbjct 1566 ATCTGTCTCCAAAGGCATGATGAATTTGAATCGCCTGTTTGCATTTT----TTGAGGATG 1621 Query 22248 -TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA 22306 ||||| || ||||||||||||||||||||||||||| || || ||||| |||| || Sbjct 1622 ATTGCGGATTATATTTGCCCATGGTGAAAACGGGGGCTAACAATTTGTCATAATTGTCCT 1681 Query 22307 CGTTTAAATCAAAACTGGTGAAACTC 22332 |||||||| | ||||||||| || Sbjct 1682 TTTTTAAATCCATTCTGGTGAAATTC 1707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184427008339314