Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq104 113 6e-20 >seq104 Length=21139217 Score = 113 bits (124), Expect = 6e-20 Identities = 185/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864 |||||| || ||| | | || |||||||||||||| | |||||||| || |||||||| Sbjct 5947161 GTCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGAGGCTCAAGCAGATTAATGTT 5947220 Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCAC 181923 ||| | ||| | ||| | ||| | || ||||| || ||| || ||||| || || | Sbjct 5947221 GTTGGCACCCACAAAGTTCTGGGCTAGATTCACGATTGTCATCTGC-AGGGAAACCTCTC 5947279 Query 181924 CGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCAT 181983 |||||||||| |||||| | || || || || | | | ||| || ||||| | ||| Sbjct 5947280 CGTGGTGGTAGGCTGACATCTCGGCCACCGATCCGGATAGCTGGGCTACCTTAACCTCAC 5947339 Query 181984 CTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCAT 182043 ||| ||| | | ||||||| ||||||| || | ||| ||||| | || | Sbjct 5947340 GCTTGTCGTTTCTCTTAAAGCAAGTGAACATCACCTTTCGCTGACCCGGCTTTAAGCCGT 5947399 Query 182044 CCGCCATATGGGCAATAGAGCGCT 182067 || ||| | | ||||||||||| Sbjct 5947400 CCACCAGACTAGGAATAGAGCGCT 5947423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627968231200800