Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq61 197 2e-45 seq104 105 8e-18 >seq61 Length=22324452 Score = 197 bits (218), Expect = 2e-45 Identities = 875/1374 (64%), Gaps = 20/1374 (1%) Strand=Plus/Plus Query 117796 GTTCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCG 117855 ||||| || |||||||||||| |||| | ||||| || || |||||||| || | Sbjct 13004068 GTTCACGG-TGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCCGG 13004126 Query 117856 TCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGAC 117915 | ||||| || ||||||| || | || || |||| || || | | |||| Sbjct 13004127 TTTTGAGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTTGGCT 13004186 Query 117916 TTTCCA--TGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGC 117973 | ||| |||| ||| | || ||||| |||||| || ||||| || || Sbjct 13004187 CTGCCACATGAAT--GTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCGGC 13004244 Query 117974 CATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATC 118033 ||| | |||| ||| | |||||||||||| ||| ||||||| | || | Sbjct 13004245 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTAGAGATCGCGAACCTT 13004304 Query 118034 ATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTT 118090 | ||||| || |||| |||||||| || || ||| || || |||| | | ||| Sbjct 13004305 CTGGGGGATGGCCTCGATGTTTTGGATTGAGCC--CCGGCTGGAT-ATGATCTGGTTCTT 13004361 Query 118091 CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAAC 118150 ||| || | ||| | | | || | || || || | ||| | ||||| || Sbjct 13004362 CATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGACCAC 13004421 Query 118151 AACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCA 118210 ||| || || | || || || || || || || || || ||||| ||| | Sbjct 13004422 CTGAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGA 13004481 Query 118211 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 118270 |||||||| |||| || || |||||||| || |||||||| || || | || ||| Sbjct 13004482 TTCATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCAGGGA 13004541 Query 118271 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTT 118330 ||| |||| || | | | | ||| ||||| || | |||||| || | | | Sbjct 13004542 GTTCCGGACGCCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAGAGGTTCGT 13004601 Query 118331 TGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAA 118390 || || | |||||| || |||| | || || | | | | || ||||| | Sbjct 13004602 TGGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCTCGTA 13004661 Query 118391 TGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATA 118450 || || ||||| |||||| ||| |||| ||| |||| || || | ||| | | || Sbjct 13004662 GGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCATAGTA 13004721 Query 118451 CATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG 118510 || ||||| ||||| | ||||| ||| || || ||| | | || ||| Sbjct 13004722 AATGGTTTCGAAAATCTGCTGATTCAACAGACCGGCTTCTTCACTCTCATATGGGAATCG 13004781 Query 118511 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 | || | | || |||| || || ||||| | ||||| || || || |||| Sbjct 13004782 CATGAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGCCTCAA 13004841 Query 118571 ATTAGACTTCCGAGCGGTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 118629 ||| |||||| || ||| || ||||||| | || |||| |||| | | || |||| Sbjct 13004842 ATTGGACTTCTTTGCC-TCTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTAAGAT 13004900 Query 118630 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 118689 |||| || || | ||| |||| ||| | ||||| | | ||||| | | |||| Sbjct 13004901 TTTTTGTAACTATCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGTCT---TCTCCG 13004957 Query 118690 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 118749 ||||| || | |||||||| || || || || || || | |||||||| Sbjct 13004958 GTGTGACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCG 13005017 Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 | | ||| || | ||||||||||||||||| | ||| |||||||| | |||| | Sbjct 13005018 CGGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCT 13005077 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 |||| ||| |||| ||||| |||||| | |||||||| || | || || ||| || Sbjct 13005078 GATTGCTCTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTT 13005137 Query 118870 GGGACTTGAGAATAGCCTTC--CAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCC 118927 | | || | || || | ||| || | ||| || || |||||| || || Sbjct 13005138 GCGCCTCAATGATGGCAAACCACAGGGATTG--AGCCTTAACCGTTCGGTTGGCACGACC 13005195 Query 118928 CTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCC 118987 ||| | |||||| || || || ||| || || || ||| | ||| ||| || Sbjct 13005196 CTCCTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCC 13005255 Query 118988 TGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 119047 || || | ||||| | ||| ||||| | ||| |||| || || |||||||| Sbjct 13005256 AGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAA 13005315 Query 119048 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 119107 ||| || || ||||| || || | |||||||| || |||| ||||| | || Sbjct 13005316 GAGATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGT 13005375 Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161 || || |||| || || | || ||||| |||||| ||||||||||| Sbjct 13005376 GTTTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTA 13005429 >seq104 Length=21139217 Score = 105 bits (116), Expect = 8e-18 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 179065 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 179124 |||||||| ||| | | || || ||||||||||| | |||||||| ||||| || ||| Sbjct 5947162 TCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGAGGCTCAAGCAGATTAATGTTG 5947221 Query 179125 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 179183 || | ||||| ||| | ||| | || || || || ||| || ||||| || || || Sbjct 5947222 TTGGCACCCACAAAGTTCTGGGCTAGATTCACGATTGTCATCTGC-AGGGAAACCTCTCC 5947280 Query 179184 GTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCATC 179243 ||| ||||| || ||| | || ||||| || | | | ||| || ||||| | |||| Sbjct 5947281 GTGGTGGTAGGCTGACATCTCGGCCACCGATCCGGATAGCTGGGCTACCTTAACCTCACG 5947340 Query 179244 CTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTC 179303 |||| ||| | | ||||| | |||||||||||| || ||||| | |||||| Sbjct 5947341 CTTGTCGTTTCTCTTAAAGCAAGTGAACATCACCTTTCGCTGACCCGGCTTTAAGCCGTC 5947400 Score = 82.4 bits (90), Expect = 9e-11 Identities = 145/209 (69%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 179934 AGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 179993 ||| ||||| |||||| | || || | ||||||||||| |||||| || || || Sbjct 5948070 AGCTTCTCGCACATTTAGAAGTTTACCCCTAAGAGGGAACACGCCGTAGAAATTTCGGCC 5948129 Query 179994 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 180053 || || ||||||| || || | || ||| || || || ||||| |||| |||||| Sbjct 5948130 AATAACGCCCAGACCAGATACAGCCAAGGACTTGGCTGAGTCTCCCTCGGTCAGGATGAG 5948189 Query 180054 CGTACACTT--TCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATA 180111 || || || | || | | || || |||| ||| ||||| |||| ||||||||| Sbjct 5948190 GGTGCAGTTAATTGAGTTCTTTCC--ACCGGCCTCGTTAGCGTCCTCCAGCTTGGGAATG 5948247 Query 180112 CCAGTAATTTTG---GACTTACGAGCGCC 180137 || | || ||| ||||| ||| |||| Sbjct 5948248 CCCTTGATCTTGCTTGACTTGCGACCGCC 5948276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618372405635880