Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq61 183 4e-41 seq104 107 2e-18 >seq61 Length=22324452 Score = 183 bits (202), Expect = 4e-41 Identities = 638/986 (65%), Gaps = 15/986 (2%) Strand=Plus/Minus Query 104618 TATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGT 104677 || || || || |||||| ||||| || | |||||||| || || ||| || Sbjct 13005429 TACCTGGAACCTTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAAAACACTGGC 13005370 Query 104678 GACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 104737 | || ||| || |||||||||||| | ||| || ||||| || |||||||||||| Sbjct 13005369 AAGGAAGAGAATCGCGCCCGCGATCTCTTTTACGCCCTGTGGATACCCGATCTCTTCATG 13005310 Query 104738 AAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTC 104797 || | || |||| | |||| ||||||| ||| | || || |||| ||||| ||| Sbjct 13005309 AAACGCGTGGAGGCCAATGGCGATTGGTCGCTCATGTGCCCCCACAAATGCCCTGGCCTC 13005250 Query 104798 TCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGG 104857 |||| ||| || || || ||| || || || |||||| | || ||||| Sbjct 13005249 CAAGATGTGTGGGGCGATGAATTCGAAAAGCTGTATGAGAAATACGAGCAGGAGGGTCGT 13005190 Query 104858 GCGACTGCGACGGTGCCAGCTGCCGATG--TGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915 || | ||||| ||| | || ||||| || || | || | ||| | Sbjct 13005189 GCCAACCGAACGGTTAAGGCT--CAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGG 13005132 Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975 | ||||| | || |||||||| | ||| ||||| || ||| ||||| ||||| ||| Sbjct 13005131 AAACTGGAAATCCGTACATGCTCTTCAAGGACGCGTGCAACAGGAAGAGCAATCAGCAGA 13005072 Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 105035 || | || |||||| | ||| | || || |||||| | |||| | | | Sbjct 13005071 ATGTTGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATACTCCGCGCCGG 13005012 Query 105036 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 105095 |||||| || || || ||||| ||||| ||||| ||| || || ||| || |||| Sbjct 13005011 ATGAGATAGCAGTCTGCAACCTTGCATCCATCGCCCTCAACATGTTTGTCACACCGGAGA 13004952 Query 105096 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAA 105155 |||| | ||||| | || || | ||||| || || | || || ||||| || | Sbjct 13004951 ---AGACGTATGATTTCAAGAAGCTAAAGGAAGTCACCAAGATAGTTACAAAAAATCTTA 13004895 Query 105156 ACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGA 105214 ||| ||||||||| || | ||| ||| | ||| || || || ||| |||| Sbjct 13004894 ACAAGATTATTGATATCAACTATTATCCCCTGCCAGAG-GCAAAGAAGTCCAATTTGAGG 13004836 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274 |||||||| |||| | ||||||||||| |||| || | | || || || | Sbjct 13004835 CACCGTCCCGTTGGCATTGGTGTTCAGGGATTCGCTGACGCGCTGATCCTCATGCGATTC 13004776 Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334 ||| ||| || ||||| | ||| || || || || ||||| || | Sbjct 13004775 CCATATGAGAGTGAAGAAGCCGGTCTGTTGAATCAGCAGATTTTCGAAACCATTTACTAT 13004716 Query 105335 GCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394 | ||| | || || || | || |||| ||| ||| |||||||| ||||||| ||| Sbjct 13004715 GGCGCCTTGGAAGCCAGCTGTGAACTGGCCCAGGCTGAGGGTCCATACGAAACCTACGAG 13004656 Query 105395 GGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGG--AAGGTGAGACCAAG 105451 || || | | |||||| | | || | || ||||||| ||||| | | | Sbjct 13004655 GG-CAGCCCGGTGAGCAAGGGAATTTTGCAGTACGACATGTGGGACAAGGTCCCAACGAA 13004597 Query 105452 CTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 105511 | | || |||||| | || ||||| ||||||| || | || | || ||| Sbjct 13004596 C--CTCTGGGACTGGCAGAAACTGAAGGAGTCCATCAAGCAGCACGGCGTCCGGAACTCC 13004539 Query 105512 CTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 105571 || || | ||||| ||||| || || ||||| || || || |||| || ||||||| | Sbjct 13004538 CTGCTGGTTGCTCCGATGCCCACTGCTTCCACAGCTCAGATTATGGGCAACAATGAATCC 13004479 Query 105572 TTTGAACCCTACACGACGAACATCTA 105597 || || ||||| || |||||||| || Sbjct 13004478 TTCGAGCCCTATACCACGAACATATA 13004453 >seq104 Length=21139217 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 |||| ||||| || |||| ||||| || ||||| ||||| ||| || |||| Sbjct 9083530 TTTGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTTTTCAGCGGCAGCTTC 9083589 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | |||||| ||||| |||||||| ||||| ||||| || || ||||||||||||| Sbjct 9083590 GCCTCTATTTTCTGGCTTAAGAAGCGCGGTCTTATGCCTGGACTGACCTTCTCCAACGAG 9083649 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 ||||||||||| |||||||| | ||| || ||||| ||| Sbjct 9083650 CTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 9083691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583201577156520