Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq61 181 1e-40 seq104 113 5e-20 >seq61 Length=22324452 Score = 181 bits (200), Expect = 1e-40 Identities = 569/868 (66%), Gaps = 24/868 (3%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||| |||||||| || || |||| ||||| || || | |||||| |||||| Sbjct 13004984 GATGCAAGGTTGCAGACTGCTATCTCATCCGGCGCGGAGTATTCAACGATTTCCGTGCAC 13005043 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || ||||||||||||| | |||| ||| ||||||||| ||| || |||||| Sbjct 13005044 AAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCACGCGTCC 13005103 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||| || ||||||||| | || || || || || || | | | | ||| | | Sbjct 13005104 TTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGATGGCAAACCACAGG 13005163 Query 79237 TCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTG-TGCGACGTACGTCCGGTACAAC 79293 | ||| || | ||| ||| ||||||| ||| |||| || |||| | Sbjct 13005164 GATTGAGCCTTAAC--CGTTCGGTTGGCACGACCCTCCTGCT-CGTATTTCTCATACAGC 13005220 Query 79294 TCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGG 79353 | | ||| | || || | ||||| | ||||| ||||| | ||| |||||||| || Sbjct 13005221 TTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTGTGGGGGCACATGAGC 13005280 Query 79354 TGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTG 79413 ||| || | | ||| || | ||||||||| || || ||||||||||| Sbjct 13005281 GACCAATCGCCATTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAA 13005340 Query 79414 AAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCC 79473 ||||| |||||| || |||| || | ||| ||| ||| || || || || Sbjct 13005341 AAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTGTTTTTCTTCAGTTCCAGGAACTCA 13005400 Query 79474 ATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCG 79533 | || || | |||||| || ||||| || ||||| || | ||| ||||||||||| Sbjct 13005401 AAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCT 13005460 Query 79534 CCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCG 79593 ||||| | || || || ||| |||||||| || | |||||||| || | || | | Sbjct 13005461 CCCTGATCCACATAACGCGCCACATTGTTGAAGACCCTCAGCATGGGAACCAACCCATTG 13005520 Query 79594 GCGACG--CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTG 79649 |||| ||||| || || || || || | || |||||| | | ||| || Sbjct 13005521 --GACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTTGCACGAATG--CAATGCACGTT 13005576 Query 79650 GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGAT 79709 || |||||||| || | |||||||||| ||||||| || | | || | | || Sbjct 13005577 GAGGCCGATGCCACCAGCAGACTTGGAGATCATAGCGCACTGCTCCACAGACTTGAATAT 13005636 Query 79710 GCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTT 79769 ||||||||| |||||| | |||| | | |||||| || ||||| ||| || ||| Sbjct 13005637 GCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAACACGACGACAGCTGCGGACGGTT 13005696 Query 79770 CGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTC----ATCA 79825 || | ||| || || || |||| || ||||||||| | |||| | | Sbjct 13005697 TGTGGCAGCGGCAAACAGCGTGGGCGATGCATGCGTGAAG----TAGCGCTCCGAGAGGA 13005752 Query 79826 GATCGTACGTCTCCTTGACGCGC-GGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGC 79884 ||| ||| || ||| | | ||| | ||| || || ||||| |||| ||| |||||| Sbjct 13005753 GATTGTAGGTTTCCACGGC-CGCATCAATGTCCTCTCCATGGATTCCGATCGCCACGCGC 13005811 Query 79885 ATGAAGAGGTACTGGGGCGTCTCGCCGA 79912 || | | || ||| || |||| ||| Sbjct 13005812 ATCAGCATGTGCTGTGGTCGCTCGGCGA 13005839 Score = 120 bits (132), Expect = 3e-22 Identities = 487/759 (64%), Gaps = 10/759 (1%) Strand=Plus/Minus Query 19195 CTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAG 19254 ||||||||| || |||| || || || ||| | || ||| |||||| ||||| Sbjct 13005736 CTTCACGCATGCATCGCCCACGCTGTTTGCCGCTGCCACAAACCGTCCGCAGCTGTCGTC 13005677 Query 19255 CTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGA 19314 |||||||| || | |||| | ||| ||| |||||||| | | || | | || | Sbjct 13005676 GTGTTTCCTGCTGACCATGACTGCCGACTCCATCGAGGGCATATTCAAGTCTGTGGAGCA 13005617 Query 19315 GTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGC-TCGAATATCCGG 19372 |||||| |||||||||| | || || ||||| || || ||| | | || || Sbjct 13005616 GTGCGCTATGATCTCCAAGTCTGCTGGTGGCATCGGCCTCAACGTGCATTGCATT--CGT 13005559 Query 19373 TCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTC 19432 | | || || || ||| || |||||| || | || | || || ||||| Sbjct 13005558 GCAAAGGGCACCTCCATTTGTGGCACAAACGGAACGTCCAATGGGTTGGTTCCCATGCTG 13005499 Query 19433 CGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCG 19492 | ||||||||||| ||| | || || | ||||| |||||||| || || | Sbjct 13005498 AGGGTCTTCAACAATGTGGCGCGTTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCC 13005439 Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTG 19552 || ||||| ||||| || || |||||| |||| ||| | || ||||| |||||| Sbjct 13005438 TTTGCCATTTACCTGGAACCTTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAA 13005379 Query 19553 AACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGAC 19612 ||| || | || |||| ||| ||||| ||||| ||| ||||||| || || Sbjct 13005378 AACACTGGCAAGGAAGAGAATCGCGCCCGCGATCTCTTTTACGCCCTGTGGATACCCGAT 13005319 Query 19613 CTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGC 19672 || |||||| | || ||| | | || ||| || |||||||| ||| ||||| Sbjct 13005318 CTCTTCATGAAACGCGTGGAGGCCAATGGCGATTGGTCGCTCATGTGCCCCCACAAATGC 13005259 Query 19673 CCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGC- 19731 |||||||| | || || | ||||| | ||| | || |||| || |||| ||| Sbjct 13005258 CCTGGCCTCCAAGATGTGTGGGGCGATGAATTCGAAAAGCTGTATGAGAAATACG-AGCA 13005200 Query 19732 CCAGGGCCGGTTCAA--GAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAA 19789 |||| || ||| ||| ||| ||| | | | ||| | || | | Sbjct 13005199 GGAGGGTCGTGCCAACCGAA--CGGTTAAGGCTCAATCCCTGTGGTTTGCCATCATTGAG 13005142 Query 19790 AGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCA 19849 || || || || || | ||||||||| || ||||||||| ||| ||| Sbjct 13005141 GCGCAAGTGGAAACTGGAAATCCGTACATGCTCTTCAAGGACGCGTGCAACAGGAAGAGC 13005082 Query 19850 AATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTT 19909 |||||| |||| | ||| | ||||||| |||| |||| || |||||| | || Sbjct 13005081 AATCAGCAGAATGTTGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATAC 13005022 Query 19910 TCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 ||| |||||| |||| || || || || || || ||| Sbjct 13005021 TCCGCGCCGGATGAGATAGCAGTCTGCAACCTTGCATCC 13004983 >seq104 Length=21139217 Score = 113 bits (124), Expect = 5e-20 Identities = 344/529 (65%), Gaps = 11/529 (2%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| ||||||||||| | || | || ||||| | || ||| || || Sbjct 9083167 TCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGCCTG 9083226 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || ||||||||| ||||||||| | || |||||||||||||| || ||||| Sbjct 9083227 AAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGC 9083286 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCA--AGGATGTCCAGATTGCCGAGGCCC 59790 || || | || ||| | | |||| ||| |||| || ||||| | ||||| | Sbjct 9083287 ATCGTAAACGAGAATCTGGTG--GAACGCTTCAGTCAGGAGGTGCAGATCACAGAGGCAC 9083344 Query 59791 GGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCA 59850 | | ||||||| | |||| || ||| | ||||| |||| |||| | Sbjct 9083345 GCTGCTTCTACGGCTTTCAGATTGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTGC 9083404 Query 59851 TGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA 59910 ||||||| | | || ||||||| | || | |||||| || || || | Sbjct 9083405 TGATCGACACTTACATCCGGGATCCGCACCAGCGAGAGTACCTGTTCAACGCTATTGAAA 9083464 Query 59911 CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGA---- 59966 || || || || || | || ||||| |||||| | ||||| |||| | Sbjct 9083465 CGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTTTCCTGGATT--TCCTCTAAGTC 9083522 Query 59967 -GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025 || |||| | || |||| || ||||| |||||| || ||||| ||| || Sbjct 9083523 GGCCAATTTTGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTTTTCAGCGG 9083582 Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085 | ||| ||||||||||||| || ||||| || || ||||| || |||| ||||| Sbjct 9083583 CAGCTTCGCCTCTATTTTCTGGCTTAAGAAGCGCGGTCTTATGCCTGGACTGACCTTCTC 9083642 Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 ||||||||| || || || ||||||||| | || || ||||| ||| Sbjct 9083643 CAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 9083691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548469104163120