Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq61 176 5e-39 seq104 114 1e-20 >seq61 Length=22324452 Score = 176 bits (194), Expect = 5e-39 Identities = 466/704 (66%), Gaps = 12/704 (2%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 ||||| ||||| || |||| || ||||| ||||| || || | || ||| ||||| Sbjct 13005738 TACTTCACGCATGCATCGCCCACGCTGTTTGCCGCTGCCACAAACCGTCCGCAGCTGTCG 13005679 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 || |||||| || | |||| | ||||| ||||| ||||| | | || | | || Sbjct 13005678 TCGTGTTTCCTGCTGACCATGACTGCCGACTCCATCGAGGGCATATTCAAGTCTGTGGAG 13005619 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGC-TCGAACGTCC 53447 |||| || |||||||||| | ||||| ||||| || || ||| | | | | | Sbjct 13005618 CAGTGCGCTATGATCTCCAAGTCTGCTGGTGGCATCGGCCTCAACGTGCATTGCA--TTC 13005561 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCCGATGGAATCGTGCCTAT 53505 |||| || ||||| | || || || ||||| |||| | |||| | || || || Sbjct 13005560 GTGCAAAGGGCACCTCCATTTGTGGCACAAACGGAACGTC--CAATGGGTTGGTTCCCAT 13005503 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 ||| | ||||||||||| ||| || || || | ||||| || || ||||| || Sbjct 13005502 GCTGAGGGTCTTCAACAATGTGGCGCGTTATGTGGATCAGGGAGGCGGCAAGCGTCCCGG 13005443 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | || ||||| ||||| || || |||||| | || | | ||||| || || ||| Sbjct 13005442 TGCCTTTGCCATTTACCTGGAACCTTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAA 13005383 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCC 53685 || || | ||||||| ||| ||| || || ||| || |||||||| || Sbjct 13005382 GAAAAACACTGGCAAGGAAGAGAATCGCGCCCGCGATCTCTTTTACGCCCTGTGGATACC 13005323 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGA 53745 || ||||||||| || |||||| | | || |||| || |||||||| || | Sbjct 13005322 CGATCTCTTCATGAAACGCGTGGAGGCCAATGGCGATTGGTCGCTCATGTGCCCCCACAA 13005263 Query 53746 GTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTAC-- 53803 ||||| |||||||| | ||| | || || || || | || ||||| || ||| Sbjct 13005262 ATGCCCTGGCCTCCAAGATGTGTGGGGCGATGAATTCGAAAAGCTGTATGAGAAATACGA 13005203 Query 53804 GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTC 53863 |||| |||| || ||| | ||| ||||| | | ||| ||| ||| | Sbjct 13005202 GCAG--GAGGGTCGTGCCAACCGAACGGTTAAGGCTCAATCCCTGTGGTTTGCCATCATT 13005145 Query 53864 AAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAG 53923 || || ||||| || |||| ||||||||| || |||||| || |||| |||| Sbjct 13005144 GAGGCGCAAGTGGAAACTGGAAATCCGTACATGCTCTTCAAGGACGCGTGCAACAGGAAG 13005085 Query 53924 AGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 ||||| ||| |||| | ||| |||||| | |||||||| || Sbjct 13005084 AGCAATCAGCAGAATGTTGGCACCATCAAGTGCAGCAACTTGTG 13005041 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | || ||||||||||| || || || ||||| || || || || |||||||| ||| Sbjct 13004553 GGCGTCCGGAACTCCCTGCTGGTTGCTCCGATGCCCACTGCTTCCACAGCTCAGATTATG 13004494 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||||| || | |||||||| || || || ||||| ||| Sbjct 13004493 GGCAACAATGAATCCTTCGAGCCCTATACCACGAACATATAC 13004452 >seq104 Length=21139217 Score = 114 bits (126), Expect = 1e-20 Identities = 513/802 (64%), Gaps = 23/802 (3%) Strand=Plus/Minus Query 74478 TTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAAGGGTTC 74537 || ||||||||||||||||| || |||| ||| || ||||||| ||| ||| |||||| Sbjct 9083960 TTCTCAAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTGAAGGGGTTC 9083901 Query 74538 TTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGGCGATCCGCCACAAAT 74594 || | ||| || |||| | || |||| | | | ||||||||||| || Sbjct 9083900 TTGGTGTTGTAGAT---CTTCCCAACGCCCAACTCCACAAGCAAACGATCCGCCACGAAC 9083844 Query 74595 TGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGTGCCTCG 74654 | |||||||| | ||| | || ||||||||| | || ||||| || ||| Sbjct 9083843 TCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATTAACAGGCAGGGCATCG 9083784 Query 74655 GTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTTGTGAATGTCTTTG- 74711 |||| || || ||| | |||| | | | | || |||| | ||| | | Sbjct 9083783 GTGAGGAATTCCTGCTCAA--TCGCCACTGCGTCGCGGATGATCTCGATGATGCGCTCGC 9083726 Query 74712 GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTCCTGATGCGAGCCT 74771 | || | | | | |||||| | | | | ||||||||| || ||| |||| Sbjct 9083725 GCTTGGGTCGCTGCAC-CAGGTGCTGGAACATCAGCACGGCAAAGTCGCAGTGCAAGCCC 9083667 Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || || | || | || || || || | || ||||||||||| || |||||||| Sbjct 9083666 TCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCATAAGACCGCGCTTCTTA 9083607 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | |||| || ||||| |||||||| || || ||||||||| Sbjct 9083606 AGCCAGAAAATAGAGGCGAAGCTGCCGCTGAAAAAGATGCCCTCCACGGCGGCAAAGGCG 9083547 Query 74892 ACAAGGCGTTGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATTCAGCT 74948 | | ||| | | | || || | || | ||||| | | ||||| || || Sbjct 9083546 ATGATGCGCTCCCCAAAATTGGCCGACTTAGAGGAAATCCAGGAAAGGGCCCAGTCTGCC 9083487 Query 74949 TTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCT--TCGG 75006 || || || || || || | || || || || | ||| ||| | | || || | | Sbjct 9083486 TTGCGCTTCACAGCCGGCATCGTTTCAATAGCGTTGAACAGG--TACTCTCGCTGGTGCG 9083429 Query 75007 GATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGA 75066 ||||| || | |||| |||| | |||| ||||||| || | ||| || Sbjct 9083428 GATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAGTGCACGTTCTCCATGG 9083369 Query 75067 ACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATT 75124 ||| | ||||||| | || ||||||| ||||| || |||| |||| || Sbjct 9083368 CAATCTGAAAGCCGTAGAAGCAGCGTGCCTCTGTGATCTGCACCTCCTGACTGAAGCGTT 9083309 Query 75125 CATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTT 75184 | | | |||||| | |||||||| || ||||||||||| || ||||| || Sbjct 9083308 CCA--CCAGATTCTCGTTTACGATGCCATCGGAGGCGGCGAAGAAGGCCAGCACGTGCGA 9083251 Query 75185 GATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATC 75244 ||| || |||||||| ||||| | || || ||| || | |||||| | |||||| Sbjct 9083250 GATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGGACAAATC 9083191 Query 75245 AATCTCCTCGACCGTCCAGAAA 75266 | ||||||||| ||||||||| Sbjct 9083190 CACCTCCTCGACGGTCCAGAAA 9083169 Score = 107 bits (118), Expect = 2e-18 Identities = 200/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAG-CAAGACGCGTACCGAATT 117362 ||||||||||||||||| ||| ||| || ||||| || | |||| || ||||| |||| Sbjct 5947134 AGTGAAAATGTAACGAGCGCTGGCACAGTCTTTGCCTCCCGTCAAG-CGGGTACCAAATT 5947192 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | || | ||||| | || || | ||||||||| ||||||||||| || || | || | Sbjct 5947193 GACCGCGAGGCTCAAGCAGATTAATGTTGTTGGCACCCACAAAGTTCTGGGCTAGATTCA 5947252 Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 | || || || ||| |||| || ||||| || || | | ||| ||||| | | Sbjct 5947253 CGATTGTCATCTGCAGGGAAACCTCTCCGTGGTGGTAGGCTGACATCTCGGCCACCGATC 5947312 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | | ||||| || ||||| | || | | ||| |||| | ||| | | |||| Sbjct 5947313 CGGATAGCTGGGCTACCTTAACCTCACGCTTGTCGTTTCTCTTAAAGCAAGTGAACATCA 5947372 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCT 117593 |||| ||||||| ||||| | || ||| ||| ||| || || |||| Sbjct 5947373 CCTTTCGCTGACCCGGCTTTAAGCCGTCCACCAGACTAGGAATAGAGCGCT 5947423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547160437055400