Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq61 264 9e-66 >seq61 Length=22324452 Score = 264 bits (292), Expect = 9e-66 Identities = 443/636 (70%), Gaps = 10/636 (2%) Strand=Plus/Plus Query 29832 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTAT 29891 |||| |||||||||||| || | || ||||| ||||||||| || || | | Sbjct 2961973 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGCTGCTCCTTCAGCGGCTCGACATGGT 2962032 Query 29892 CCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29951 |||||||||||| | ||| |||| | |||||||||| || ||||| | || || || | Sbjct 2962033 TCAGGTAGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGACCCGTCA 2962092 Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011 | || || ||||||| ||||| || | ||| ||||||||| || || || || || | Sbjct 2962093 CATGGGCGATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAATGGCACGCCCAGGC 2962152 Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGC-TC------ACG 30064 |||| || | ||||||||||||||||||||| ||||| ||| ||| || ||| Sbjct 2962153 CCATATCGGCGCTCCTCTGGTAGAGCTGACACGACAGCTCACCG-CGCGTCTGGGAGACG 2962211 Query 30065 TAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTC 30124 |||||||| || | ||| |||||||| || ||||| | || || ||| Sbjct 2962212 TAAAACTGCGCCAGGCAGTGACACGGAGGCAGGGCCATCTTCGGGATATCCAGCGGATTC 2962271 Query 30125 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 30184 || || ||| ||||||||||| ||| ||||| ||| ||||| ||| | | | Sbjct 2962272 CAAGCCGACATGATGATGCGCCGATCTGAGGGGTTATTCTTGATGGTGTCGATCACCTGG 2962331 Query 30185 TGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCC 30243 |||||||||| | ||| | || |||||| | | || || | |||||| || || Sbjct 2962332 CGCAGCTGATCGATTCCCTTGCCGCTGTAGTCGTCGTCGCAGGT-GGCGTACTCCGCCCC 2962390 Query 30244 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30303 |||||||| ||||||||| ||||||||||| ||||| || || || | | | | ||| Sbjct 2962391 GAAATGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACTGCGCGTTCCGTGAA 2962450 Query 30304 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30363 ||| |||||||| ||| ||||||| | ||| |||||||||| | || |||| | Sbjct 2962451 CCCCAGCTTGTCCAGAAACTCTCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTCGC 2962510 Query 30364 AGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30423 ||| |||| || || || |||||||||||||||||||| | || || Sbjct 2962511 CTGCAGCAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACAGC 2962570 Query 30424 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||||||| |||||| || || || ||||| Sbjct 2962571 GCGGAAGAAGACCCGCTTGGTGGTCAGCAGTGGAAA 2962606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406270175651316