Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq61 217 1e-51 >seq61 Length=22324452 Score = 217 bits (240), Expect = 1e-51 Identities = 434/641 (68%), Gaps = 8/641 (1%) Strand=Plus/Plus Query 6492 TAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGA 6551 |||| | |||| ||| || ||||| || || |||||||| | ||| |||||| Sbjct 2961967 TAATGATCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGCTGCTCCTTCAGCGGCTCGA 2962026 Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACC 6611 ||||||||||||| |||| || |||| || || || | || || || || | Sbjct 2962027 CATGGTTCAGGTAGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGAC 2962086 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 || ||||| |||||||||| |||||||| || || || |||||||| ||||| | Sbjct 2962087 CCGTCACATGGGCGATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAATGGCACGC 2962146 Query 6672 CTAACCCCATGTCTCCCGATCGT-TGATAGAGCTGGCAGGACAGCTCCCC------ATTC 6724 | | ||||| || || || | || |||||||| || |||||||| || | Sbjct 2962147 CCAGGCCCATATC-GGCGCTCCTCTGGTAGAGCTGACACGACAGCTCACCGCGCGTCTGG 2962205 Query 6725 GCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTC 6784 | |||||| || || ||| ||| ||||| || || |||||| |||| |||| | Sbjct 2962206 GAGACGTAAAACTGCGCCAGGCAGTGACACGGAGGCAGGGCCATCTTCGGGATATCCAGC 2962265 Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 || ||||| || |||| | ||| | | || ||||| ||| | |||||||||| Sbjct 2962266 GGATTCCAAGCCGACATGATGATGCGCCGATCTGAGGGGTTATTCTTGATGGTGTCGATC 2962325 Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 || | ||||||| || ||||| || ||||| | |||| |||||| Sbjct 2962326 ACCTGGCGCAGCTGATCGATTCCCTTGCCGCTGTAGTCGTCGTCGCAGGTGGCGTACTCC 2962385 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 ||||| || || | ||||||||| ||||| |||||||||| ||||| | | || Sbjct 2962386 GCCCCGAAATGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACTGCGCGTTCC 2962445 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 | ||||||| ||||||||||||| |||| | | || |||||||||| | ||| | Sbjct 2962446 GTGAACCCCAGCTTGTCCAGAAACTCTCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTC 2962505 Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACC 7084 | | ||| ||||| || ||| ||| |||||||||||||||||||||| || Sbjct 2962506 TTCGCCTGCAGCAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCC 2962565 Query 7085 ACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 || | || | || || || || |||||||| ||||| Sbjct 2962566 ACAGCGCGGAAGAAGACCCGCTTGGTGGTCAGCAGTGGAAA 2962606 Score = 217 bits (240), Expect = 1e-51 Identities = 434/641 (68%), Gaps = 8/641 (1%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| |||||||| || || || || | || | |||| |||||||||||||||| Sbjct 2962606 TTTCCACTGCTGACCACCAAGCGGGTCTTCTTCCGCGCTGTGGCCGAGGAGCTGCTGTGG 2962547 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 |||||| ||| ||| || ||||| ||| | | | ||| | ||||||||| Sbjct 2962546 TTCGTGGCGGGCAAGACGGACGCCAAGTTGCTGCAGGCGAAGAACGTGCACATCTGGGAC 2962487 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | || | | |||| ||||||||||||| ||||||| | || | | ||||| Sbjct 2962486 GGGAACAGCACCAGAGAGTTTCTGGACAAGCTGGGGTTCACGGAACGCGCAGTTGGCGAT 2962427 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 |||||||||| ||||| ||||||||| | || || ||||||||||| |||| Sbjct 2962426 CTGGGCCCGGTGTACGGCTTCCAGTGGCGGCATTTCGGGGCGGAGTACGCCACCTGCGAC 2962367 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 | ||||| || ||||| || ||||||| | |||||||||||| | ||| Sbjct 2962366 GACGACTACAGCGGCAAGGGAATCGATCAGCTGCGCCAGGTGATCGACACCATCAAGAAT 2962307 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 ||||| || | | ||| | |||| || ||||| ||| |||| |||| |||| Sbjct 2962306 AACCCCTCAGATCGGCGCATCATCATGTCGGCTTGGAATCCGCTGGATATCCCGAAGATG 2962247 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT------GGGGAGCTG 34633 || || || ||||| ||| ||| || || |||||| | | || |||||| Sbjct 2962246 GCCCTGCCTCCGTGTCACTGCCTGGCGCAGTTTTACGTCTCCCAGACGCGCGGTGAGCTG 2962187 Query 34634 TCCTGCCAGCTCTATCA-ACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 || || |||||||| || | || || || ||||| | || ||||| |||||||| || Sbjct 2962186 TCGTGTCAGCTCTACCAGAGGAGCGCC-GATATGGGCCTGGGCGTGCCATTCAACATCGC 2962128 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCT 34752 || || |||||||| |||||||||| ||||| ||| || || || || | Sbjct 2962127 CTCCTATGCCCTGCTCACCCACATGATCGCCCATGTGACGGGTCTGAAGCCGGGCGACTT 2962068 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || || || |||| || |||| ||||||||||||| |||||| ||| | || Sbjct 2962067 TGTCCACACCATGGGCGACACGCACGTCTACCTGAACCATGTCGAGCCGCTGAAGGAGCA 2962008 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTA 34853 |||||| || || ||||| || ||| |||| | |||| Sbjct 2962007 GCTGCAGCGCACACCGCGACCCTTTCCCAAGCTGATCATTA 2961967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448216884556560