Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq5 89.7 4e-13 seq119 84.2 2e-11 >seq1 Length=21770863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 2175736 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGAC 2175677 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| |||| Sbjct 2175676 TACAACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTGCGTCTGCGTGGTGGCG 2175622 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 2175964 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGAC 2175905 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 2175904 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 2175851 >seq5 Length=900 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 52 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGAC 111 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 112 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 165 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 280 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGAC 339 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 340 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 393 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 508 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGAC 567 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 568 TACAACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTGCGTCTGCGTGGTGGC 621 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 736 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAAGACGGACGCACCCTGTCCGAC 795 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 796 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 849 >seq119 Length=24197627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || | || || ||||| || ||| |||| Sbjct 4459256 GACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 4459197 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||||||||||||||||| || ||| || | || |||||| | Sbjct 4459196 GACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTC 4459137 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 4459136 CGTCTGCGTGGTGG 4459123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || | || || ||||| || ||| |||| Sbjct 4460375 GACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 4460316 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||||||||||||||||| || ||| || | || |||||| | Sbjct 4460315 GACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTC 4460256 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 4460255 CGTCTGCGTGGTGG 4460242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || | || || ||||| || ||| |||| Sbjct 4460743 GACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 4460684 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||||||||||||||||| || ||| || | || |||||| | Sbjct 4460683 GACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTC 4460624 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 4460623 CGTCTGCGTGGTGG 4460610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || | || || ||||| || ||| |||| Sbjct 4460971 GACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 4460912 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||||||||||||||||| || ||| || | || |||||| | Sbjct 4460911 GACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTC 4460852 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 4460851 CGTCTGCGTGGTGG 4460838 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || || ||||| || ||| |||| |||| ||||| | |||||||| Sbjct 4459898 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGAT 4459839 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 4459838 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 4459786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355827169956021