Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq119 122 6e-23 seq67 122 6e-23 seq61 122 6e-23 >seq119 Length=24197627 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| || |||||| | || ||||| | || Sbjct 4460012 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACTTTGGAGGTTGAGCCGTCG 4459953 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || || || || || | || |||||||| Sbjct 4459952 GACACCATTGAGAATGTGAAGGCCAAGA-TTCAGGATAAGGAGGGAATCCCCCCAGATCA 4459894 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| | ||||||||| Sbjct 4459893 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 4459834 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 4459833 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 4459803 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| || ||||| || |||||||| | | Sbjct 4460608 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCA 4460549 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 4460548 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCTCCAGATCA 4460490 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| | ||||||||| Sbjct 4460489 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 4460430 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 4460429 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 4460399 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| || ||||| || |||||||| | | Sbjct 4460836 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4460777 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 4460776 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCTCCAGATCA 4460718 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| | ||||||||| Sbjct 4460717 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 4460658 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 4460657 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 4460627 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| || |||||||| | | Sbjct 4459349 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4459290 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 4459289 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCTCCAGATCA 4459231 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| | ||||||||| Sbjct 4459230 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 4459171 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 4459170 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 4459140 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| || |||||||| | | Sbjct 4461064 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4461005 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 4461004 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCTCCAGATCA 4460946 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||||| |||||| | ||||||||| Sbjct 4460945 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 4460886 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 4460885 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 4460855 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| || ||||| || |||||||| | || Sbjct 4459784 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCGTCG 4459725 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || || || || || | || |||||||| Sbjct 4459724 GACACCATTGAGAATGTGAAGGCTAAGA-TTCAAGATAAGGAGGGAATCCCCCCAGATCA 4459666 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| ||||||||||| | |||||| | || ||||| Sbjct 4459665 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGACGCACCCTGTCTGACTACAA 4459606 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 4459605 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 4459575 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| || |||||||| | | Sbjct 4458893 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4458834 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 4458833 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCTCCAGATCA 4458775 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||| || || || | ||||||| | |||||||| Sbjct 4458774 GCAGCGTCTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGCACTCTTTCTGATTACAA 4458715 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| || || || || || Sbjct 4458714 CATCCAGAAGGAGTCAACTTTGCACTTGGT 4458685 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| || |||||||| | | Sbjct 4459121 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCA 4459062 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 4459061 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCTCCAGATCA 4459003 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||| || || || | ||||||| | || ||||| Sbjct 4459002 GCAGCGTCTGATCTTCGCCGGCAAACAGCTCGAGGATGGACGCACTCTTTCTGACTACAA 4458943 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 4458942 CATCCAGAAGGAGTCGACCCTTCACTTGGTT 4458912 Score = 89.7 bits (98), Expect = 3e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || || | || |||||||| |||||| | || || |||||||| ||||||||| Sbjct 4460375 GACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 4460316 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| |||||| | |||||||||||| || || ||||| || | || || ||| Sbjct 4460315 GACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTT 4460259 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 |||||||||||| || || || ||| | || ||||| || |||||| | || || || | Sbjct 4461847 TAAAATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACTTTGGAGGTGGAGCC 4461788 Query 23667 CACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | || || |||| ||| | || | || ||| || || || || | || |||| Sbjct 4461787 TTCCGATACCATTGAGAATGTGAAGGC-CAAGATTCAGGATAAGGAGGGAATCCCCCCAG 4461729 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 |||| |||||| | || || |||||||| || || || || | ||||||| | || | Sbjct 4461728 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACTCTTTCTGACT 4461669 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||||| || || ||||| || | || || ||| Sbjct 4461668 ACAACATCCAGAAGGAGTCGACCCTTCACTTGGTT 4461634 >seq67 Length=2158 Score = 122 bits (134), Expect = 6e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || |||||||| || || || | Sbjct 938 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 997 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 998 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 1057 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || |||||||| | ||||| | || || Sbjct 1058 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 1117 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 1118 AACATTCAGAAGGAGTCCAC 1137 >seq61 Length=22324452 Score = 122 bits (134), Expect = 6e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || |||||||| || || || | Sbjct 13090471 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 13090530 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 13090531 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 13090590 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || |||||||| | ||||| | || || Sbjct 13090591 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 13090650 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 13090651 AACATTCAGAAGGAGTCCAC 13090670 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| || || || ||||| | || || || | | Sbjct 4253543 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4253602 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || || || || || | || |||||||| Sbjct 4253603 GACACCATCGAGAATGTCAAGGC-CAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCA 4253661 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| |||| |||||| | ||| ||||| Sbjct 4253662 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGTCCGACTACAA 4253721 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 4253722 CATCCAGAAGGAGTCCAC 4253739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337976137366484