Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq61 226 2e-54 >seq61 Length=22324452 Score = 226 bits (250), Expect = 2e-54 Identities = 430/636 (68%), Gaps = 10/636 (2%) Strand=Plus/Plus Query 29604 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGT 29663 |||| |||||||||||| || | || ||||| | ||||||| || || |||| Sbjct 2961973 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGCTGCTCCTTCAGCGGCTCGACATGGT 2962032 Query 29664 CAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29723 ||||||||||| | || |||| |||||||||||| || ||||| | || || || | Sbjct 2962033 TCAGGTAGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGACCCGTCA 2962092 Query 29724 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCC 29783 | || || ||||||| ||||| || | ||| ||||||||| || ||||| || || | Sbjct 2962093 CATGGGCGATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAATGGCACGCCCAGGC 2962152 Query 29784 CCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGC-TC------ACG 29836 |||| || | ||||||||||||||| ||||| ||||| ||| ||| || ||| Sbjct 2962153 CCATATCGGCGCTCCTCTGGTAGAGCTGACACGACAGCTCACCG-CGCGTCTGGGAGACG 2962211 Query 29837 TAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTT 29895 |||||||| | | |||| || |||||||| |||||||| | || || || Sbjct 2962212 TAAAACTG-CGCCAGGCAGTGACACGGAGGCAGGGCCATCTTCGGGATATCCAGCGGATT 2962270 Query 29896 CCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 29955 ||| || ||| ||||||||||| ||| ||||| ||| ||||| ||| | | | Sbjct 2962271 CCAAGCCGACATGATGATGCGCCGATCTGAGGGGTTATTCTTGATGGTGTCGATCACCTG 2962330 Query 29956 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNC 30015 |||||||||| | ||| | || |||||| | Sbjct 2962331 GCGCAGCTGATCGATTCCCTTGCCGCTGTAGTCGTCGTCGCAGGTGGCGTACTCCGCCCC 2962390 Query 30016 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30075 |||||||| ||||||||| ||||||||||| ||||| || || || | | | | ||| Sbjct 2962391 GAAATGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACTGCGCGTTCCGTGAA 2962450 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| |||||||| ||| ||||||| | ||| |||||||||| | || |||| | Sbjct 2962451 CCCCAGCTTGTCCAGAAACTCTCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTCGC 2962510 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 ||| |||| || || || |||||||||||||||||||| | || || Sbjct 2962511 CTGCAGCAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACAGC 2962570 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 | ||||||| |||||| || || || ||||| Sbjct 2962571 GCGGAAGAAGACCCGCTTGGTGGTCAGCAGTGGAAA 2962606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406122990223978