Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq61 259 4e-64 >seq61 Length=22324452 Score = 259 bits (286), Expect = 4e-64 Identities = 441/636 (69%), Gaps = 10/636 (2%) Strand=Plus/Plus Query 27098 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGAT 27157 |||| |||||||||||| || | || ||||| ||||||||| || || || | Sbjct 2961973 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGCTGCTCCTTCAGCGGCTCGACATGGT 2962032 Query 27158 CCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 27217 |||||||||||| | ||| |||| |||||||||||| || ||||| | || || || | Sbjct 2962033 TCAGGTAGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGACCCGTCA 2962092 Query 27218 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 27277 | || || ||||||| ||||| || | ||| ||||||||| || || || || || | Sbjct 2962093 CATGGGCGATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAATGGCACGCCCAGGC 2962152 Query 27278 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT-------ACG 27330 |||| || | ||||||||||||||||||||| ||||| || ||| | ||| Sbjct 2962153 CCATATCGGCGCTCCTCTGGTAGAGCTGACACGACAGCTCACC-GCGCGTCTGGGAGACG 2962211 Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTC 27390 |||||||| | | ||| |||||||| || ||||| | || || ||| Sbjct 2962212 TAAAACTGCGCCAGGCAGTGACACGGAGGCAGGGCCATCTTCGGGATATCCAGCGGATTC 2962271 Query 27391 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 27450 || || ||| ||||||||||| ||| ||||| ||| ||||| ||| | | | Sbjct 2962272 CAAGCCGACATGATGATGCGCCGATCTGAGGGGTTATTCTTGATGGTGTCGATCACCTGG 2962331 Query 27451 TGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACTCTGCTCC 27509 |||||||||| | ||| | || |||||| | | || || | |||||| || || Sbjct 2962332 CGCAGCTGATCGATTCCCTTGCCGCTGTAGTCGTCGTCGCAGGT-GGCGTACTCCGCCCC 2962390 Query 27510 GAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 27569 |||||||| ||| ||||| ||||||||||| ||||| || || || | | | | ||| Sbjct 2962391 GAAATGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACTGCGCGTTCCGTGAA 2962450 Query 27570 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 27629 ||| |||||||| ||| ||||||| | ||| |||||||||| | || |||| | Sbjct 2962451 CCCCAGCTTGTCCAGAAACTCTCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTCGC 2962510 Query 27630 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 27689 ||| |||| || || || |||||||||||||||||||| | || || Sbjct 2962511 CTGCAGCAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACAGC 2962570 Query 27690 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 | ||||||| |||||| || || || ||||| Sbjct 2962571 GCGGAAGAAGACCCGCTTGGTGGTCAGCAGTGGAAA 2962606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369470619133613