Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq61 439 3e-118 seq104 131 2e-25 >seq61 Length=22324452 Score = 439 bits (486), Expect = 3e-118 Identities = 1220/1856 (66%), Gaps = 24/1856 (1%) Strand=Plus/Plus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 ||||| | || || |||||||| | | | || || ||||| || ||||||||||| Sbjct 13004063 TTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATT 13004122 Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889 || ||||| ||||| |||| |||||| || ||| |||||||| || | Sbjct 13004123 CCGGTTTTGAGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTT 13004182 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || || || | |||||| || | |||||||| ||||| ||||| || || | ||| || Sbjct 13004183 GGCTCTGCCACATGAATGTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCG 13004242 Query 76950 GCCATTTTTATAATGGTCTTT--TGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 77007 |||||||| || ||| ||| |||| |||||||| | || ||| | | | || Sbjct 13004243 GCCATTTTAATCGTGGACTTGACTGAG--ATTTCCCACACCGTCTTGTAGAGATCGC-GA 13004299 Query 77008 TATCATCTGGAAGGT----TTG-TATTTTGAATGGAACCACCATCTG-ATATAATTGTAT 77061 | | ||||| | | | | | ||||| || || || || ||| |||| || | Sbjct 13004300 -ACCTTCTGGGGGATGGCCTCGATGTTTTGGATTGAGCC-CCGGCTGGATATGATCTGGT 13004357 Query 77062 TCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAA 77121 |||| || || || | |||||| | | ||| |||| | | || | |||| | || | Sbjct 13004358 TCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGA 13004417 Query 77122 CTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCA 77181 | | |||||||| || |||| |||| | ||||| || || ||||||| || || | Sbjct 13004418 CCACCTGAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGA 13004477 Query 77182 CAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATA 77241 ||||||||||| |||| ||| ||||| || |||||||| ||||| || || |||| | Sbjct 13004478 AGGATTCATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCA 13004537 Query 77242 AACTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 || | || || || || | |||| || || || | | ||| ||||| || Sbjct 13004538 GGGAGTTCCGGACGCCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAGAGG 13004596 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 | | || || ||||| | ||||| || | |||||| || || | || Sbjct 13004597 TTCGTTGGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCC 13004656 Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 | || ||||| || || || || | | || |||||||| || |||||||| || || Sbjct 13004657 TCGTAGGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCA 13004716 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGA---GATCTTGTGCTTCAATACTATCAAAC 77477 || ||||| ||||||||||||| || ||| | || | | ||||| || ||| | Sbjct 13004717 TAGTAAATGGTTTCGAAAATCTGCTGATTCAACAGACCGGCTTCTTCA---CTCTCATAT 13004773 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 || | | | || || | || || || ||||||||||| ||||| |||| || | Sbjct 13004774 GGGAATCGCATGAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGG 13004833 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || ||| |||||| | || || ||||| | |||||||| || || || ||||| || Sbjct 13004834 TGCCTCAAATTGGACTTCTTTGCCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTG 13004893 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC 77655 || |||||| | ||||| || || |||||||| || |||||| | ||||| Sbjct 13004894 TTAAGATTTTTTGTAACTATCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGTCTTC 13004953 Query 77656 -CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 | | | ||||||||||| | || || ||||| || || || ||||||| ||||| Sbjct 13004954 TCCGGTGTGACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCC 13005013 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | || |||| | || || || || | || || || ||||| ||||| | ||| Sbjct 13005014 GGCGCGGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTC 13005073 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || || |||||||| | ||||| | |||||| | || || ||||| | || ||||| Sbjct 13005074 TGCTGATTGCTCTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCC 13005133 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGC 77894 | || | || || || | ||| | | | ||| || | | | ||| || Sbjct 13005134 ACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCACGA 13005193 Query 77895 CTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 | ||| || |||| ||| ||| ||| |||||||| ||||| ||||| | | Sbjct 13005194 CCCTCCTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGG 13005253 Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 |||||||||| | |||||||| | ||||| || |||| ||| || |||||||| Sbjct 13005254 CCAGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATG 13005313 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||||||| |||||||| || || ||| ||||| |||| | || ||||| || || Sbjct 13005314 AAGAGATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCA 13005373 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 || || || || || || || ||||| | | ||| || ||||| ||||| || || || Sbjct 13005374 GTGTTTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATG 13005433 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | || || || || ||||||||||| | ||| | || || || | Sbjct 13005434 GCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAG 13005493 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || |||| ||| |||| | || || || ||||| ||||| ||| |||| | | || Sbjct 13005494 ACCCTCAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTGCCC 13005553 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 |||| ||||| | | | | || || || || || ||| || || | |||| Sbjct 13005554 TTTGCACGAATGCAATGCACGTTGAGGCCGATGCCACCAGCAGACTTGGAGATCATAGCG 13005613 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 || | | || | | | | || ||||| || ||| | ||||| | || || ||| Sbjct 13005614 CACTGCTCCACAGACTTGAATATGCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAA 13005673 Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434 || |||| || || | || | || ||| | || || ||||||||||| Sbjct 13005674 CACGACGACAGCTGCGGACGGTTTGTGGCAGCGGCAAACAGCGTGGGCGATGCATGCGTG 13005733 Query 78435 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGA 78494 || | || || || |||||||| ||||| | || | || |||||| | ||| Sbjct 13005734 AAGTAGCGCTCCGAGAGGAGATTGTAGGTTTCCACGGCCGCATCAATGTCCTCTCCATGG 13005793 Query 78495 ATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATT 78554 ||||| | ||| || ||||||| ||| ||||| |||| || | |||| ||| | Sbjct 13005794 ATTCCGATCGCCACGCGCATCAGCATGTGCTGTGGTCGCTCGGCGATCTTTCCGTTTCTC 13005853 Query 78555 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 || | || || || |||| || ||||| ||||||||||| || |||||| Sbjct 13005854 TTGAGCAGATAGGAGCGCTCCAGGGTCTTAAAGCCAAAATAGTTATAGCCAAAGTC 13005909 >seq104 Length=21139217 Score = 131 bits (144), Expect = 2e-25 Identities = 459/713 (64%), Gaps = 9/713 (1%) Strand=Plus/Minus Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900 |||||||| || || || ||||| |||||| ||||| || || || || |||| Sbjct 9083990 ACTCCCATGCGCTGGTACTCTCCCACCTTTTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 9083931 Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960 ||||| | ||||| || | || || || | || || || || || || || Sbjct 9083930 GATATCATCTCCATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAAC 9083871 Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020 || || || | ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 9083870 TCCACAAGCAAACGATCCGCCACGAACTCTATGTACTGGGACATCAGGTCACAATTCATG 9083811 Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080 || || | ||||| || || || || || || || || || || || | || || || Sbjct 9083810 CCGATTAAATTAACAGGCAGGGCATCGGTGAGGAATTCCTGCTCAATCGCCACTGCGTCG 9083751 Query 48081 ACTATTATC--GATGTTACCGTTTCCTCACTTGG-TGGATACAACAAATGTTTAAACATT 48137 || ||| |||| | | | | | ||||| | | | || || || | ||||| Sbjct 9083750 CGGATGATCTCGATGATGCGCT---CGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATC 9083694 Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 | ||||| || || || | || || || | | || | ||||| || || || Sbjct 9083693 AGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTC 9083634 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||| || || || || || ||||| || || | ||||| || || Sbjct 9083633 AGTCCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCGCTGAAA 9083574 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT---G 48314 || ||||| || ||||| ||||| ||| | | | ||| || || |||| || | Sbjct 9083573 AAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCAAAATTGGCCGACTTAGAG 9083514 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 ||||| | ||||| || ||||| ||| ||| ||||| ||||| ||||| Sbjct 9083513 GAAATCCAGGAAAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCAATAGCG 9083454 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 || || || | | | | | ||| | |||||| || || | | ||| ||| Sbjct 9083453 TTGAACAGGTACTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTAC 9083394 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 || || ||||| | || || || || |||||||| ||||| || || | || |||||| Sbjct 9083393 ATCTCCGAGTGCACGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAGCGTGCCTCTGTG 9083334 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATC 48547 ||||| |||||| || || ||||| ||| |||||| ||||| || ||||| Sbjct 9083333 ATCTGCACCTCCTGACTGAAGCGTTCCACCAGATTCTCGTTTACGATGCCATC 9083281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694598265066720