Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq61 417 1e-111 seq104 136 6e-27 >seq61 Length=22324452 Score = 417 bits (462), Expect = 1e-111 Identities = 1215/1855 (65%), Gaps = 22/1855 (1%) Strand=Plus/Plus Query 75365 TTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 ||||| | || ||||||||||||| | | ||||| ||||| || ||||||||||| Sbjct 13004063 TTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATT 13004122 Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484 || ||||| ||||| |||| |||||| || ||| || ||||| || | Sbjct 13004123 CCGGTTTTGAGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTT 13004182 Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || || || | |||||| || | |||||||| ||||| ||||| || || | ||| || Sbjct 13004183 GGCTCTGCCACATGAATGTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCG 13004242 Query 75545 GCCATTTTTATAATGGTCTTT--TGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 75602 |||||||| || ||| ||| |||| |||||||| | || ||| | | | || Sbjct 13004243 GCCATTTTAATCGTGGACTTGACTGAG--ATTTCCCACACCGTCTTGTAGAGATCGC-GA 13004299 Query 75603 TATCATCTGGAAGAT----TTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATT 75657 | | ||||| ||| | | | ||||| || || || | ||||| || || Sbjct 13004300 -ACCTTCTGGGGGATGGCCTCGATGTTTTGGATTGAGCCCCGGCTGGATATGATCTGGTT 13004358 Query 75658 CTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 75717 ||| || || || | |||||| | |||||||| | | || | |||| | || || Sbjct 13004359 CTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGAC 13004418 Query 75718 AATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCAC 75777 | |||||||| || |||| |||| | ||||| || || ||||||| || || | Sbjct 13004419 CACCTGAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAA 13004478 Query 75778 AGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAA 75837 ||||||||||| |||| ||| ||||| || |||||||| ||||| || || |||| | Sbjct 13004479 GGATTCATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCAG 13004538 Query 75838 ACTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGAT 75896 || | || || || || | |||| || || || | | ||| ||||| || | Sbjct 13004539 GGAGTTCCGGACGCCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAGAGGT 13004597 Query 75897 CTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCAT 75956 | ||| || ||||| | ||||| || | |||||| ||||| | || | Sbjct 13004598 TCGTTGGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCT 13004657 Query 75957 TATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGT 76016 || |||||||| | || || | || ||||| || || || || || || || | Sbjct 13004658 CGTAGGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCAT 13004717 Query 76017 AATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 | ||||| ||||||||||||| || ||| || | | ||||| ||| ||| | || Sbjct 13004718 AGTAAATGGTTTCGAAAATCTGCTGATTCAACAGACCG-GCTTCTTCACTCTCATATGGG 13004776 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 | | | || || | || || || | ||||||||| ||||| |||| || | || Sbjct 13004777 AATCGCATGAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGC 13004836 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 ||| |||||| | | || ||||| | || ||||| || ||||| ||||| || || Sbjct 13004837 CTCAAATTGGACTTCTTTGCCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTA 13004896 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TTTTC-CA 76252 |||||| | ||||| || || |||||||| || |||||| | | ||| | Sbjct 13004897 AGATTTTTTGTAACTATCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGTCTTCTCC 13004956 Query 76253 TCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 | | |||||||| || || || || ||||| || || || || |||| ||||| | Sbjct 13004957 GGTGTGACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGC 13005016 Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 || |||| | || |||||||| | || || |||||||| || |||| ||| || Sbjct 13005017 GCGGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGC 13005076 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 || |||||||| |||| || | |||||| | || | ||||| |||||||||| | Sbjct 13005077 TGATTGCTCTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACT 13005136 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTC 76492 || | || || || | ||| | | | ||| || | | ||| || | Sbjct 13005137 TGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCACGACCC 13005196 Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 || || |||| ||| | | ||| |||||||| ||||| ||||| | | ||| Sbjct 13005197 TCCTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCA 13005256 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||| | || ||||| | ||||| || |||| ||| || |||||||| ||| Sbjct 13005257 GGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAAG 13005316 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTA 76672 ||||| |||||||| || || ||| ||||| |||| | | ||||| || || || Sbjct 13005317 AGATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTG 13005376 Query 76673 TTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 76732 || || || || || |||||||| | | ||| || ||||| ||||| || || || || Sbjct 13005377 TTTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCA 13005436 Query 76733 ATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 | |||| || || || ||||||||||| | ||| | || || || | || Sbjct 13005437 AAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAGACC 13005496 Query 76793 CTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT 76852 |||| ||| |||| | || || || || || ||||| ||| |||| | | || | Sbjct 13005497 CTCAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTT 13005556 Query 76853 GCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 |||||||| | | | | | ||||| || || || || || ||||| | ||| | Sbjct 13005557 GCACGAATGCAATGCACGTTG--AGGCCGATGCCACCAGCAGACTTGGAGATCATAGCGC 13005614 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | | | || | | | |||||||| || || | ||||| | || || |||| Sbjct 13005615 ACTGCTCCACAGACTTGAATATGCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAAC 13005674 Query 76971 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGA 77030 | |||| || || | || | || ||||| || || |||||||| |||| Sbjct 13005675 ACGACGACAGCTGCGGACGGTTTGTGGCAGCGGCAAACAGCGTGGGCGATGCATGCGTGA 13005734 Query 77031 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAA 77090 | | || || || |||||||| ||||| | | || || || ||| | ||| | Sbjct 13005735 AGTAGCGCTCCGAGAGGAGATTGTAGGTTTCCACGGCCGCATCAATGTCCTCTCCATGGA 13005794 Query 77091 TTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTT 77150 |||| | || || ||||||| ||| ||||| ||||| || | |||| ||| | | Sbjct 13005795 TTCCGATCGCCACGCGCATCAGCATGTGCTGTGGTCGCTCGGCGATCTTTCCGTTTCTCT 13005854 Query 77151 TCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 | | || || || |||| || ||||| ||||||||||| || |||||| Sbjct 13005855 TGAGCAGATAGGAGCGCTCCAGGGTCTTAAAGCCAAAATAGTTATAGCCAAAGTC 13005909 >seq104 Length=21139217 Score = 136 bits (150), Expect = 6e-27 Identities = 534/836 (64%), Gaps = 9/836 (1%) Strand=Plus/Minus Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389 |||||||| ||||| || || || |||||| ||||| || || || || |||| Sbjct 9083990 ACTCCCATGCGCTGGTACTCTCCCACCTTTTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 9083931 Query 46390 GATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAAT 46449 ||||| | ||||| || | || || || | || || || || || || || Sbjct 9083930 GATATCATCTCCATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAAC 9083871 Query 46450 TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATT 46509 || || || | ||| || ||||| ||||| ||| ||||| ||||||||||| Sbjct 9083870 TCCACAAGCAAACGATCCGCCACGAACTCTATGTACTGGGACATCAGGTCACAATTCATG 9083811 Query 46510 CCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCAT-- 46567 || || | || || || || || || || || || || || ||||| | || || | Sbjct 9083810 CCGATTAAATTAACAGGCAGGGCATCGGTGAGGAATTCCTGCTCAATCGCCACTGCGTCG 9083751 Query 46568 CCGATATTATCGATGTTACTGTTTCCTCACTT-GGTGGATGCATCAAATGTTTAAACATT 46626 | ||| | |||||| | | | | | ||| ||| | |||| || || | ||||| Sbjct 9083750 CGGATGATCTCGATGATGCGCT---CGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATC 9083694 Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 | ||||| || || || | ||| || || | | || | ||||| || || || Sbjct 9083693 AGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTC 9083634 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || |||||||| || || ||||| || ||||| || |||| ||||| || || Sbjct 9083633 AGTCCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCGCTGAAA 9083574 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA--- 46803 || ||||| || || || || || |||| | | ||| || || |||| ||| Sbjct 9083573 AAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCAAAATTGGCCGACTTAGAG 9083514 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 |||||| | ||||| || ||||| ||| ||| ||||| ||||| ||||| Sbjct 9083513 GAAATCCAGGAAAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCAATAGCG 9083454 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 || || || | | | | | ||| | || || || || | | ||| ||| Sbjct 9083453 TTGAACAGGTACTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTAC 9083394 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 || || || || | ||| || || || |||||||| ||||| || || | ||| || || Sbjct 9083393 ATCTCCGAGTGCACGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAGCGTGCCTCTGTG 9083334 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043 ||||| ||||| || || ||||| || |||||| || || || ||||| || Sbjct 9083333 ATCTGCACCTCCTGACTGAAGCGTTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCG 9083274 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAG 47103 || || || |||| || || || |||| || ||| |||| | |||| Sbjct 9083273 GCGAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAG 9083214 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||| | | || || || | ||| || || || | |||||||| || ||||| || Sbjct 9083213 TCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAGGCCTCAGC 9083158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712862010423360