Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dryococelus_20australis_20[genbank_20GCA_5F002236955.1_202017-07-28] 357,088 sequences; 3,416,447,916 total letters Query= NC_006642.1 Length=14286 Score E Sequences producing significant alignments: (Bits) Value seq331287 178 1e-40 SEQ52087 161 9e-36 SEQ92369 140 3e-29 SEQ56690 84.2 2e-12 seq228802 78.8 8e-11 >seq331287 Length=19190 Score = 178 bits (196), Expect = 1e-40 Identities = 458/693 (66%), Gaps = 15/693 (2%) Strand=Plus/Plus Query 2443 CGGACTATCCATGTTGGGACGTTTCTCGGGTGGTGCTC---AAATCCAACAACGGCTTGG 2499 ||||| |||||||||||||| || || ||||| | ||| || || | || | || Sbjct 3216 CGGACGTCCCATGTTGGGACGTCTCCCGTGTGGTTTTGTATAAAACCTACGATGGGTCGG 3275 Query 2500 ATTACATCAATGCCAATCATATGGCTGGATTTGACGGAAGATGTAAATTTATAGCGACGC 2559 | ||||||||||||| | |||||||||| ||| || ||||| |||||||||| Sbjct 3276 ACTACATCAATGCCAGCTACATGGCTGGATATGATAACAGTAAAAAATTCATAGCGACGC 3335 Query 2560 AAGAACCTATGGCAACAACTTTCGATGATTTTTGGAGCATGGTCTGGCAGGAAAACTCTC 2619 ||||||| ||| ||| || ||| | ||||| ||| |||||| ||||| || |||| | Sbjct 3336 AAGAACCGATGCCAATCACATTCAACGATTTCTGGCACATGGTTTGGCAAGAGGACTCCC 3395 Query 2620 GGATCATCGTGATGCTGAATGGTACCAAGCACGAATCACAACCTACAAGCCTCCAGTATT 2679 | || || |||||||||||||| || || | | | ||| | | | ||||||| Sbjct 3396 GCATTATTGTGATGCTGAATGGCGCCGAGAAAAAGTTACAGGCAGAGTGTATTCAGTATT 3455 Query 2680 TCTGCGTGACCCAAGATCATACAATATTAAAAAAGTTTGTCATCAAACAAGAAAGCATTA 2739 || | |||||| | || ||||||||| ||||| | ||||| ||| ||||| Sbjct 3456 TCGCTCCTAATCAAGATAACACGATATTAAAAGAGTTTATAATCAAGGAAGGGGACATTA 3515 Query 2740 GAAGGGAATCCCATTACGTGTACACTAAGTTGAGCA--TTGTTCATAGTTCGAGTGGAGA 2797 | ||| ||||| | | || || | || || | ||| | |||||| Sbjct 3516 AACTGGAGCAGGATTACAGCGAGA-GAATTTTA-CATGTTACTTATATACACACTGGAGA 3573 Query 2798 AGTGAGAGTGATCCATCATTTCAAATACGTTGACTGGATAGAAACTGGCGTTCCTGATGT 2857 | | || || || |||||||| || | |||||| |||| | |||| ||| | Sbjct 3574 AATAAGGACAATTCACCATTTCAAGCACTTGGACTGGCCAGAATCCGGCGATCCAAACAC 3633 Query 2858 AGGATCGTTTCTTGATTTGCTGCTAGCAGTCAACAAGCAAGACCAGTATTATTTCAAGAA 2917 || | ||| || | || ||| || ||||| || |||| ||| ||| | Sbjct 3634 TAGAGCATTTATTAACTTCCTGACAGTCGTCAATAAAACGTACCAAAATTTCTTCGTCGA 3693 Query 2918 AGCGTTGCTGCCTAACCAACTTCCAGCAGGTCCAATTGTCGTCCATGGTGATATGGGTGT 2977 ||| ||| | |||||| || ||||||||||||| ||||| |||| ||||| Sbjct 3694 AGCATTGACAAATCACCAACCTCTGCCAGGTCCAATTGTTGTCCACAGTGACGCTGGTGT 3753 Query 2978 CGGAAGAAC----GGCTGCATTTTGCGTCGCAGATATATGCCTGTACCAAATCGTATACA 3033 |||||||| |||| |||| | ||||||||| ||| |||| | | | || Sbjct 3754 TGGAAGAACTGGAGGCTTCATT----GCCGCAGATATCTGCTTGTATCGTCTAATTTATT 3809 Query 3034 CAGCAACTGTGTCAGTGCCGTTAATAGTGCTTAAAGCCAGGCAACAACGGCGATTTAGCA 3093 ||||| | || ||||| || | | |||| | || ||| || ||| | | ||||| Sbjct 3810 CAGCATCAGTATCAGTACCATCAGTAGTTTTGAAGATCAGACAGCAAAGAAATTGTAGCA 3869 Query 3094 TCTCAACTTTGAACCACTACATATTTATTCATA 3126 || | |||| ||||| || || |||||| ||| Sbjct 3870 TCCTATCTTTAAACCAATATATTTTTATTAATA 3902 >SEQ52087 Length=11363 Score = 161 bits (178), Expect = 9e-36 Identities = 507/777 (65%), Gaps = 20/777 (3%) Strand=Plus/Minus Query 13152 TTCA-AGCTCATACGAGATGAGTACTACAGCATTGTAACTCAGCCGATCGATAAACTAAT 13210 |||| || | || | ||| |||||||| | | | ||| | || | || || || ||| Sbjct 10624 TTCATAGATTATTCAAGAGGAGTACTATAACGTCGTAGCCCAATCTATTGACAAGAAAAT 10565 Query 13211 TGCCAGCTTCATGAAGCCCGAGAATCAACC----AAAAAACCGGTACTGGGACATTCCTT 13266 | ||||||| |||||| || ||| | ||||||| | || || |||| | Sbjct 10564 CGACAGCTTCTGGAAGCCAGAAAATTACGGGGAAAAAAAACTGATATATTGATGTTCCAT 10505 Query 13267 GCTGGGAGCATTCACGCGTTGTGCTAGATACTAAA---GGAGGATCGGACTACATCCACG 13323 | ||||| ||||||| || || || | | ||| || ||| | || ||||| |||| Sbjct 10504 GTTGGGATCATTCACAAGTCGTAATACAATCCAAAAACGGTGGACCAGATTACATACACG 10445 Query 13324 CGAATTGGATCGATGGCTTTGAAGAGCCGAAGAA---GTTCATCGCCACTCAAGGTCCCT 13380 || ||||| || || |||||||| || || ||| || || || || ||||| | Sbjct 10444 --AACTGGATGGACGGATTTGAAGATTAAAAAAAAAAGTTTATTGCTACACAGGGTCCTT 10387 Query 13381 TTGCGAACACCACTGCAGACTTCTGGAGGCTCGTGTGGCAGGAGCATTGTTATGTGATAG 13440 | | || || | || || |||| | ||||| | || | |||| |||| Sbjct 10386 TCGAAAATACTATCCTTGAATTTTGGAAGAAGACGTGGCGACAAAATACTAATGTCATAG 10327 Query 13441 TGATGTTAACTCCAACTAAAGTTAGCGGTGAAGAAAAATGTTATCAGTATTGGTGTCCCA 13500 ||||| | || || ||||||| ||| || |||||||| || |||||| || Sbjct 10326 TGATGCTGACGAAGACCAAAGTTAATAATGAGGAGAAATGTTACCAATATTGGCCTCTTC 10267 Query 13501 GCGAAAATGGGTCACTGG--ACATGAACGGATTCCGCATCAAAACTCTGAAAGTCACAGT 13558 ||||||| |||| ||| |||| || | ||||||||| | | | | |||| Sbjct 10266 ATGAAAATGATGAACTGATTACA-GAACA-ATACAAGATCAAAACTTTAAGAATTGCAGT 10209 Query 13559 TCGGGCTAAATACGTCCGGACACTGATCGAAATCACGAATAAATCCTTGAAGACATCGAG 13618 | | || ||| || ||||| |||| |||||||| ||| | | |||| ||| || Sbjct 10208 AAGACCAAATTACATCAGGACATTGATAGAAATCACAGATATAACAACAAAGAGATCAAG 10149 Query 13619 GAAACTAAGTCACTTCCAGTGCAGCAATTGGTTTGAATACAACACTCCTTCCGACTTACC 13678 || ||| ||| || ||| | |||||| ||| || | ||||||||| | ||| | Sbjct 10148 AAACATAACTCATTTTCAGGTGACTGATTGGTATGAGTATGATACTCCTTCCAATTTAGC 10089 Query 13679 GTGGTTTGTGCAATTCATCAACATGATCGATAGAGTACGTCAAGTCTACATGAAGCTATT 13738 || |||||| | ||| | || || || ||||||| || ||| |||||| | || | Sbjct 10088 GTTGTTTGTTGACTTCGTAAAAATTTTCTATAGAGTCCGGAAAGCATACATGCAAATACT 10029 Query 13739 TA---ATCCGAAGGATGCGTTGCTCTGCCCGGTGGTGGTGCACTGCAGCACTGGAGTCGG 13795 | | || ||||| || | || | || ||||| || || || ||| | || Sbjct 10028 AATGGAGCCTAAGGAGATTTTTCCGAGCTCCGTCGTGGTACATTGTAGTGATGGCATTGG 9969 Query 13796 CAGAACTGGAACCTTCTGCGCAGTGGACATCTGCTTGAACCAACTCGTGAAAACGTCCGC 13855 ||||||||||| | || || |||||| |||| ||||||||||| ||||| || | Sbjct 9968 AAGAACTGGAACATATTGTGCTGTGGACGTCTGTTTGAACCAACTAGTGAACACATAGAA 9909 Query 13856 AATTTGTGTACCCCAAGTGGTTTTTAATGTGCGCGAGCAACGTTATGCTGGTGTTAT 13912 ||||| ||||| || ||| | || | || ||||||| || | ||| |||| Sbjct 9908 AATTTCGGTACCAGAAACAGTTCTAAAGATTCGTCAGCAACGATACTCAGGTATTAT 9852 >SEQ92369 Length=46177 Score = 140 bits (154), Expect = 3e-29 Identities = 402/611 (66%), Gaps = 17/611 (3%) Strand=Plus/Plus Query 13259 CATTCCTTGCTGGGAGCATTCACGCGTTGTGCTAGATACTAAA---GGAGGATCGGACTA 13315 |||||| | ||||| ||| || | || | || | ||||| || ||||| || || Sbjct 17505 CATTCCACGTTGGGACCATACATGAGTCATCATACAATCTAAAACTGGTGGATCAGATTA 17564 Query 13316 CATCCACGCGAATTGGATCGATGGCTTTGAAGAGCCGAAGAAGTTCATCGCCACTCAAGG 13375 || ||||| || ||||| ||||| |||||||| ||| ||||| ||||||| ||||| Sbjct 17565 TATACACGCTAACTGGATTGATGGATTTGAAGACGAGAAAAAGTTGATCGCCATACAAGG 17624 Query 13376 TCCCTTTGCGAACACCACT-GCAGACTTCTGGAGGCTCGTGTGGCAGGAGCATTGTTATG 13434 ||| | || || || | || || ||||||| | | || ||||| | || | ||| Sbjct 17625 TCC-TATGAAAAATACAGTCGCTGAATTCTGGAAGATGGTATGGCAATAAAATAGCCATG 17683 Query 13435 TGATAGTGATGTTAACTCCAACTAAAGTTAGCGGTGAAGAAAAATGTTATCAGTATTGGT 13494 ||||||||||| | || || |||| || | | | || |||||| || ||||||| Sbjct 17684 TGATAGTGATGCTGACGAAGACCAAAGATAATGATCAGGAGAAATGTCTCCAATATTGGT 17743 Query 13495 GTCCCAGCGAAAATGGGTCACTGGACATGAACGGATTCCGCATCAAAACTCTGAA-AGTC 13553 ||| | ||||| | || | | | | || | ||||||||||| || |||| Sbjct 17744 GTCTTTGTGAAAACGAAGAGTTGATTACGGAAGAATACAAAATCAAAACTCTAAAGAGTC 17803 Query 13554 ACAGTTCGGGCTAAATACGTCCGGACACTGATCGAAATCACGAATAAATCCTTGAAGACA 13613 ||| | | || ||| || || | | |||||||| ||||| || | || | | Sbjct 17804 GCAGCTAGATTAAATTACATCAAAACGTTTCTAGAAATCACTGATAAAACCATTAACAGA 17863 Query 13614 TCGAGGAAACTAAGTCACTTCCAGTGCAGCAATTGGTTTGAATACAACACTCCTTCCGAC 13673 || | | | ||| || |||| | | ||||| || |||||||||| ||| Sbjct 17864 TCACTGTTTATTACTCATTTTCAGTAGACCCTTTGGT----GTATGACACTCCTTCAGAC 17919 Query 13674 TTACCGTGGTTTGTGCAATTCATCAACATGATCGATAGAGTACGTCAAGTCTACATGAAG 13733 || || ||| | || ||||||| | | | | ||| || ||| ||| || || Sbjct 17920 ATAGGGTTGTTCCTTCACTTCATCAGAGTAGTGAAAAAAGTGCGGAAAGCATACCTGGAG 17979 Query 13734 ---CTATTTAATCCGAAGGATGCGTTGCTC-TGCCCGGTGGTGGTGCACTGCAGCACTGG 13789 ||||| | || | | | ||| ||| | || |||| || || || || |||| Sbjct 17980 ATACTATTAGAGCCCA---AAGTGTTTCTCGAGTCCTATGGTTGTACATTGTAGTGCTGG 18036 Query 13790 AGTCGGCAGAACTGGAACCTTCTGCGCAGTGGACATCTGCTTGAACCAACTCGTGAAAAC 13849 ||||| ||||||||||| || || || || ||||||||| || ||||||| ||||| | Sbjct 18037 TGTCGGAAGAACTGGAACGTTTTGTGCTGTTGACATCTGCATGCACCAACTGCTGAAAGC 18096 Query 13850 GTCCGCAATTT 13860 || ||||| Sbjct 18097 TTCAAAAATTT 18107 >SEQ56690 Length=29381 Score = 84.2 bits (92), Expect = 2e-12 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 8898 AAAAAGTAATTCGGACAGCCCCGGCCGGGAATCGAACCTGGATCTTTTGGTTACGCACCA 8957 ||||| ||||||||||||| | |||||||||||| | |||| | | |||||| | | Sbjct 17969 AAAAAATAATTCGGACAGCTTGGACCGGGAATCGAATCCAGATCACTCGATTACGCGCTA 17910 Query 8958 AGAGCTCTTCCAGTTAAGCTATCTAAGACATCGT 8991 || ||||||||||||||||||| |||||| || Sbjct 17909 AGGACTCTTCCAGTTAAGCTATCCGAGACATTGT 17876 >seq228802 Length=80453 Score = 78.8 bits (86), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 8898 AAAAAGTAATTCGGACAGCCCCGGCCGGGAATCGAACCTGGAT-CTTTTGGTTACGCACC 8956 ||||| ||||||||| ||||||| |||||||||||| | ||| | | ||| ||||| Sbjct 24061 AAAAAATAATTCGGATAGCCCCGACCGGGAATCGAAACCAGATCCCTACGGTGTTGCACC 24002 Query 8957 AAGAGCTCTTCCAGTTAAGCTATCT 8981 || ||||||||| ||||||||||| Sbjct 24001 GAGTGCTCTTCCATTTAAGCTATCT 23977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 45408538564256