Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq136 105 7e-18 seq64 86.0 6e-12 >seq136 Length=558006 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 |||||||| ||| || || ||||| ||||||||||| ||||| ||||| | || || Sbjct 338526 CCCAGTTCAACGAGTAGTCGGTCCGCAACAAATTCTATGTATTGACACATAAGTTTACAA 338467 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 ||||| ||||| | || || | || || ||||||||| ||| || || |||| Sbjct 338466 TTCATGCCTATCATTTCGACAGGCAACGCGTCTGTCAAAAATTCTTGTTCGATTTCAACA 338407 Query 16898 GCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 || |||||||| || | |||||||| || ||| | ||| | | ||| ||||| Sbjct 338406 GCATCCTTAATGATTGACGTGACTCGTTCGCAAGATGGTTTCTGTATTATGTGTCTAAAC 338347 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCT 16988 || | ||| || || || |||||||| |||| Sbjct 338346 ATTAAACACGCAAAGTCACAATGTAAACCCT 338316 >seq64 Length=869071 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 119866 GTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATA-CAGACG 119923 ||| || || ||||| ||||||| ||| ||||||| ||||| || || | ||| Sbjct 669799 GTAGCCATTAGGATCACAACCATCTATACTA-TATTTATTATTTAAATAATTAGCCGACT 669741 Query 119924 CTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATACGT 119983 | || ||| |||||||||| || |||||||| | |||||| || ||||| ||||| | Sbjct 669740 GTAAA-GCATTTTCAGGAGTTTCACTCCATTCTAATATTTTCTTTGCCCAATACATTCTC 669682 Query 119984 AAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAAGGGA 120043 || ||||||||||||| ||| ||||| ||| ||| || |||||||| | Sbjct 669681 AAAAATCCATGCATTTTTCCTGTTGTCACCATCTGATTTTGACACGCATTCCATAAATCA 669622 Query 120044 TCGTGTGT 120051 || ||||| Sbjct 669621 TCATGTGT 669614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517518571181040