Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq136 113 5e-20 >seq136 Length=558006 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 16016 CCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAA 16075 |||||||| | || || || || ||||||||||| ||||||||||| | | ||| Sbjct 338526 CCCAGTTCAACGAGTAGTCGGTCCGCAACAAATTCTATGTATTGACACATAAGTTTACAA 338467 Query 16076 TTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACC 16135 || || ||||| | | || || | || | ||| ||||||| |||||| || |||| Sbjct 338466 TTCATGCCTATCATTTCGACAGGCAACGCGTCTGTCAAAAATTCTTGTTCGATTTCAACA 338407 Query 16136 GCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAAC 16195 || || |||||||| ||| ||||| ||| ||| | || ||| |||| ||||| Sbjct 338406 GCATCCTTAATGATTGACGTGACTCGTTCGCAAGATGGTTTCTGTATTATGTGTCTAAAC 338347 Query 16196 ATTAGACACGCGAAGTCGCAATGTA 16220 |||| |||||| ||||| ||||||| Sbjct 338346 ATTAAACACGCAAAGTCACAATGTA 338322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| |||||||| | ||| ||||||||||| || | || || ||||| | || Sbjct 337828 ATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTGG 337769 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || ||||| ||||| || ||||| | ||||| |||||| |||||||| | || Sbjct 337768 AAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAGA 337709 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATA 16634 |||||||| || || || || || ||||| || ||||||| Sbjct 337708 TTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATA 337666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511387691382960