Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq97 93.3 3e-14 >seq97 Length=1675059 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 101759 TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCC 101818 || || | |||| |||| || ||||||||| || |||||||| || ||||| | ||| Sbjct 1318839 TGTGCCAGCATGTAAGTCAACAGAGAATAGGATGCTATGTTAAAAGGTACTCCAAGACCC 1318780 Query 101819 ATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGA 101878 || ||||| ||||||||| || |||||||| |||| || | | |||||||||||| Sbjct 1318779 ATGTCAGCGCTTCTTTGATAAAGCTGACAGGACAGCTCGCCGTTGCTAACATAAAATTGA 1318720 Query 101879 CTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACAC 101938 | ||| || || || || |||| | |||||||| ||||||||| || Sbjct 1318719 ACGAGACAATGGCATGGGGGTAATGCCATCTGTGGAATGTCAATTGGATTCCAAGCTGAC 1318660 Query 101939 ATTAACATCCTTCT 101952 || | || ||||| Sbjct 1318659 ATAATGATTCTTCT 1318646 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 102035 TTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCA 102094 ||||| | ||| || || || ||||||||||||||||| |||||||| | || || || Sbjct 1318489 TTATACTTTGCACCAAAGTGTCTCCACTGAAATCCATAAACAGGTCCTAAGTCGCCCTCT 1318430 Query 102095 TCTCTGTCATAAAAAC--CAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 ||||| || ||| | |||| |||| |||| | || | ||| |||| ||| | Sbjct 1318429 TCTCTATCTGTAAAGCCGCAAG--AGTCTAGAAATTCACGCGAGCTATTTGCATTCCAGA 1318372 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACA 102212 | | || ||||| || ||||| | || ||||| | || ||||| | | Sbjct 1318371 TATTAACATTTTTAGCTGACAGTTCTTTAGCATTTGTTGATCCCTTTATGAACCATAGTA 1318312 Query 102213 GTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAAT 102265 |||||| ||||| ||| ||||||| || | || |||||||| | ||||||| Sbjct 1318311 ATTCTTCGACAACTCCTTTCCAAAACACCCGTTTTGTAGTTAATAATGGAAAT 1318259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361232805314678