Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq111 183 4e-41 seq136 105 8e-18 >seq111 Length=5712365 Score = 183 bits (202), Expect = 4e-41 Identities = 190/249 (76%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 53056 CTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 53115 ||||||||| ||| || | | |||||| |||||| || || || | ||| | | ||| Sbjct 1383 CTGAATAGAACCATTATTTGCAATAATCTCATTCTTCATGTCCTCGTCCCAGAGATCTCT 1442 Query 53116 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 53175 || |||||| |||| | | ||| ||||| || ||||||||||||||||||| ||||| Sbjct 1443 TTCAGTTAAATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCG 1502 Query 53176 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 53235 || || || || ||||| ||||| ||||| ||||||||||||||||| ||||| || || Sbjct 1503 CCTTGTATAGATGTTACTCGTATATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGC 1562 Query 53236 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 53295 || || || || ||||||||||| | || ||| |||||||| |||| | || || Sbjct 1563 GGTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAAT 1622 Query 53296 TTTATCTTT 53304 ||| ||||| Sbjct 1623 TTTTTCTTT 1631 Score = 150 bits (166), Expect = 2e-31 Identities = 223/314 (71%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 || |||||||||||||| ||||| | || | | |||||| | |||||| || || ||| Sbjct 2817 TTACCTGTATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAAG 2876 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 ||||||| | |||| || | ||| ||||| || ||||| | ||||||||| || ||| Sbjct 2877 TATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATTA 2936 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 ||||| || || | ||||||||| | ||||| || ||||| || || || ||| | Sbjct 2937 TTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACC--AGCTATTG 2994 Query 54275 --CTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGA 54332 |||| || || |||||| | || || || || || || || |||| || Sbjct 2995 GTGTTCCTCTTGCTCGAATACAATGAACGTTAAGCCCAATGCCACCAGCTGATTTACTGA 3054 Query 54333 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392 | | || || | |||||| || ||||| ||||| ||||||||||| || |||| | | Sbjct 3055 TAAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTCA 3114 Query 54393 GTAGAAAACAGCTA 54406 | ||||| || ||| Sbjct 3115 GAAGAAAGCAACTA 3128 >seq136 Length=558006 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 24401 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 24460 || ||| |||||||| || | | ||||||||| ||||| | ||||| ||||| | ||| Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 24461 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAA 24520 || || || || || | ||||| || || || ||||| || |||||||| | | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAG 337710 Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 24568 ||| ||||| || ||||| || ||||||||| || ||||||||||| Sbjct 337709 ATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATG 337662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593690592889440